RetrogeneDB ID: retro_mluc_1196

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429805:1898661..1900200(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP1A1
• Ensembl ID: ENSMLUG00000005048
• Aliases: None
• Description: None

Sequence

>retro_mluc_1196
GTTGGACGTGACAAATATGAGCCTGCGGCCGTTTCAGAGCAAGACAACAAGAAAAGGCCAAGAAAGAGAGGGATATAGAT
GAGCTGAATAAAGAAGTGTCTATGGATGACCATAAACTTAGCCTTGACGAACTTCATCGCAACTACGGAACAGACTTGGA
CCAAGGCTTAAGCTCTGTTCCAGCTGCAGAGATCCTGGCCCGAGCAGGTCCCAACGCCCTCACTTCGCCTCCCACCACCC
CCGAGTGGGTCAAATTCTGCCGGCAGCTGTTTGGGGGGCTCTCAATGTTACTGTGGATTGGAGCGATTCTCTTTCTTGGC
TTATGGCATCCAAGCTACCACGGAAGAGGAACTTCAGAGTGATAATCTGTACCTCGGTGTGGTGCTGTCTGCTGTCGTCA
TCATCACCGGCTGGTTCTCCTACTATCAAGAAGCTAAGAGCTCAAAGATCATGGAATCCTTCAAAAACATGGTTCCATAG
TAAGCCCTGGTGATTTGAAATTGTGAGAAAATGAGCATAAACACGGAGGAGGTGGATGTTGGGGACCTGGTAGAAATAAA
AGGCGAGGATTGGATCTCTGCTGACCTCAGGATCATATCTGCCAGCAGCTGCAAGGTGGATAACTCCTCGCTCACCGGTG
AATCAAAGCCCCAGACCAGGTCTCCGGACTTCACAAATGAAAACCCCTTGGAGACAAGGAACATTGCCTTCTTTTCAGCC
AACTGCATTGAAGGCACTGCCCTTGGCATCGTCATGTACACTGGAGGCCACAGTGTCATGGGAAGAATGGCCACGCTGGC
CTCTGGGCTGGGAGGCAGCCAGACCCACAGCACTGCAGAAATCGAATGCTTTAGTCAGCCCATCATGGGTGTGGCCATGT
TCCTGGGGGTGTCCTTATTCATCCTCTCACTGATCCTCAAATATACCAGGCTTGAGGCCATCATCTTCCTCATTGATATC
ATTGCAGCCAATGTGCCCGAAGGTCTGCTGGCCACTGTCACGGTGTTTCTGACCCTCACTGCCTAACACATGGCCCGGGA
AAACTGCTTAATGAAGAACTAAGAGGCTGTATCCATATCCACCATCTGCTCCCATAAAACTTGAACTCTGACTCAGAACC
GGATGGCGGTGGCCCACATGTGGTTTTGCAATCATATCCACGAAGCCGACACCACAGAGAATCAGAAAAGTGTCTCCTTC
AACAAGTCTTCAGCTACCTGGCTCACCCTGTCCAGAATCTCAGGGCTTTGTAATAGAGCCGTGTTACAGGCCAGCCAGGA
AAACCTGCCTGTCCTGAAGTGGGCAGTGACAGGCGAGCCTGCGAGTTGGTACTCGAAGTGCATCGAGCTGTGTTGTGAGA
CCTTGAAGGAGATGAGAGAACGGTACCCCAGAATCATCGAGATACCCTTCAACTCCACCAACAAGTACCAGTTGTCCATT
CACAAGAACCCCAACACGGCTGAGCCCCTGCTGGTAATTAAGGGGGCCCCAGAGAGGATCCTGGACCGCTGCAGCTCCAT
CCTGCTCCACTGCAAGGAG

Alignment

ORF - retro_mluc_1196 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.5 %
• Parental protein coverage: 52.84 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VGRDKYEPAAVSEHGNKK-KAKKERDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLSTARAAEILARD
          VGRDKYEPAAVSE..NKK.KAKKERD.DEL.KEVSMDDHKLSLDELHR.YGTDL..GLS...AAEILAR.
Retrocopy VGRDKYEPAAVSEQDNKK<KAKKERDIDELNKEVSMDDHKLSLDELHRNYGTDLDQGLSSVPAAEILARA

Parental  GPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFL-AYGIQAATEEEPQNDNLYLGVVLSAVVIITG
          GPNALT.PPTTPEWVKFCRQLFGG.SMLLWIGAIL.FL.AYGIQA.TEEE.Q.DNLYLGVVLSAVVIITG
Retrocopy GPNALTSPPTTPEWVKFCRQLFGGLSMLLWIGAIL-FL>AYGIQATTEEELQSDNLYLGVVLSAVVIITG

Parental  CFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVD
          .FSYYQEAKSSKIMESFKNMVP..ALVI.N.EKMSIN.EEV.VGDLVE.KG.D.I.ADLRIISA..CKVD
Retrocopy WFSYYQEAKSSKIMESFKNMVP**ALVI*NCEKMSINTEEVDVGDLVEIKGEDWISADLRIISASSCKVD

Parental  NSSLTGESEPQTRSPDFTHENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPI
          NSSLTGES.PQTRSPDFT.ENPLETRNIAFFS.NC.EGTA.GIV.YTG...VMGR.ATLASGL.G.QT..
Retrocopy NSSLTGESKPQTRSPDFTNENPLETRNIAFFSANCIEGTALGIVMYTGGHSVMGRMATLASGLGGSQTHS

Parental  AAEIEHFIQLITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARK
          .AEIE.F.Q.I.GVA.FLGVS.FILSLIL.YT.LEA.IFLI.II.ANVPEGLLATVTV.LTLTA..MAR.
Retrocopy TAEIECFSQPIMGVAMFLGVSLFILSLILKYTRLEAIIFLIDIIAANVPEGLLATVTVFLTLTA*HMARE

Parental  NCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKSSATWLALSRI
          NCL.KN.EAV....S.STICS.KT.TLTQNRM.VAHMWF.N.IHEADTTENQ..VSF.KSSATWL.LSRI
Retrocopy NCLMKN*EAV----SISTICSHKT*TLTQNRMAVAHMWFCNHIHEADTTENQKSVSFNKSSATWLTLSRI

Parental  AGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYPKLVEIPFNSTNKYQLSIHK
          .GLCNRAV.QA.QENLP.LK.AV.G....S...KCIELCC...KEMRERYP...EIPFNSTNKYQLSIHK
Retrocopy SGLCNRAVLQASQENLPVLKWAVTGEPA-SWYSKCIELCCETLKEMRERYPRIIEIPFNSTNKYQLSIHK

Parental  NPNTAEPRHLLVMKGAPERILDRCSSILLQGKE
          NPNTAEP..LLV.KGAPERILDRCSSILL..KE
Retrocopy NPNTAEP--LLVIKGAPERILDRCSSILLHCKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1196 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005048	1 retrocopy	retro_mluc_1196 ,
Monodelphis domestica	ENSMODG00000005035	1 retrocopy	retro_mdom_682,