RetrogeneDB ID: retro_mluc_1292

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429815:6452769..6453638(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023743
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RPRD1B
• Ensembl ID: ENSMLUG00000012053
• Aliases: None
• Description: None

Sequence

>retro_mluc_1292
GCGGGACCCATCGTCTCGGTGTGGCACCGAGAGCTGCGCAAAGCAAATCAAATAGAAAGCTTACTTTTCTATATTTAGCA
AATGATGTCATCCAAAACAGTAAAAGGAAAGGACCTGAATTCATTAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTC
TCATGTTGCTAGAGAGGCAGATGAAGGCTGTAAAAAACCTTTAGAAAGATTGCTGAACATCTGGCAAGAAAGAAGTGTGT
ATGGCAGCAAGTTCATACAGCAGCTGAAGCTGTCTATGGAGGACTCCAAGAGCCCTCCCCCCAAAGCAACAGAGGAGAAG
AAATCTCTGAAGCGAGCTTTTCAACAGATACAAGAGGAGGAGGATGATGACTACCCTGGAAGCTATTCTCCTCAAGATCC
TTCTGCAGGACCGCTCTTGACTGAGGAACTAATCAAAGCTTTGCAGGACCTGGAAAATGCTGCATCAGGGAATGCTACTG
TCCGACAGAAAATTGCTTCTTTGCCCCAGGAAGTGCAAGATGTTTCTCTGCTGGAAAAAATAACAAACAAAGAGGCAGCT
GAATGTCTTTCAAAAACAGTAGATGAAGCATGTCTGTTACTAGCAGAATATAACGGGTGCCTGGCGGCAGAACTGGAAGA
CCGGCGCCAGCTGGCTTGGATGTTGGTGAAGTACACCCAGAACCAGAAAGATGTTTTGTCAGAAAAGAAGAAAAAACTAG
AAGAATATAAACAGAAGCTTGCTCGGGTAGCCCAGGTCCGCAAGGAACTGAAGTCCCATATTCAGAGTTTGCCAGACCTC
TCATTGCTGCTCAACGTCACAGGGGGCTTGGCCCCCCTGCCCTCTGCTGGTGACCTCTTTTCTACTGAC

Alignment

ORF - retro_mluc_1292 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.19 %
• Parental protein coverage: 88.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AGPIVSVWHRELRKA-KSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLE
          AGPIVSVWHRELRKA.KSNRKLTFLYLANDVIQNSKRKGPEF.REFESVLVDAFSHVAREADEGCKKPLE
Retrocopy AGPIVSVWHRELRKA<KSNRKLTFLYLANDVIQNSKRKGPEFIREFESVLVDAFSHVAREADEGCKKPLE

Parental  RLLNIWQERSVYGGEFIQQLKLSMEDSKSPPPKATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPL
          RLLNIWQERSVYG..FIQQLKLSMEDSKSPPPKATEEKKSLKR.FQQIQEEEDDDYPGSYSPQDPSAGPL
Retrocopy RLLNIWQERSVYGSKFIQQLKLSMEDSKSPPPKATEEKKSLKRAFQQIQEEEDDDYPGSYSPQDPSAGPL

Parental  LTEELIKALQDLENAASGDATVRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLA
          LTEELIKALQDLENAASG.ATVRQKIASLPQEVQDVSLLEKIT.KEAAE.LSKTVDEACLLLAEYNG.LA
Retrocopy LTEELIKALQDLENAASGNATVRQKIASLPQEVQDVSLLEKITNKEAAECLSKTVDEACLLLAEYNGCLA

Parental  AELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPDLSLLPNVTGGLAP
          AELEDRRQLA.MLV.YTQNQKDVLSEK.KKLEEYKQKLARV.QVRKELKSHIQSLPDLSLL.NVTGGLAP
Retrocopy AELEDRRQLAWMLVKYTQNQKDVLSEKKKKLEEYKQKLARVAQVRKELKSHIQSLPDLSLLLNVTGGLAP

Parental  LPSAGDLFSTD
          LPSAGDLFSTD
Retrocopy LPSAGDLFSTD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1292 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012053	1 retrocopy	retro_mluc_1292 ,