RetrogeneDB ID: retro_mluc_1293

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429815:6908930..6909271(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023650
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PFDN2
• Ensembl ID: ENSMLUG00000004526
• Aliases: None
• Description: None

Sequence

>retro_mluc_1293
CAGCGGGGCCTAGCATCCAAGGCAGCCGAGCTGGAGATGGAGTTGAAGGAGCACAGCCAGTGATCCATACACTGAAGGAG
ACAGATGAAACCCACAAGTACTTCCGCATGGTTGGAGGGGTGCTGATGGAGCGCACTGTCAAAGAGGCGCTGCCTGCCTC
AGAGAACAACAAGGAGAAGATCATTGAGACACTGACACAGCAGCTTCAGGCCAAGGGGAAAGAACTAAATGAATTCCGGG
AAAAGCAAAATATTCGACTCATGGGGGAGGACGAGAAGCCAGCCAAGGAAAACTCAGAAGGAGCTGGGGCTAAGGCCAGC
TCAGCCAGAGTGTTGGTCTCC

Alignment

ORF - retro_mluc_1293 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.29 %
• Parental protein coverage: 91.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QRGLASKAAELEMELNEHSL-VIDTLKEVDETRKCFRMVGGVLVERTVKEVLPALENNKEQIQKIIETLT
          QRGLASKAAELEMEL.EHS..VI.TLKE.DET.K.FRMVGGVL.ERTVKE.LPA.ENNKE...KIIETLT
Retrocopy QRGLASKAAELEMELKEHSQ<VIHTLKETDETHKYFRMVGGVLMERTVKEALPASENNKE---KIIETLT

Parental  QQLQAKGKELNEFREKHNIRLMGEDEKPAKENSEGAGAKASSAGVLVS
          QQLQAKGKELNEFREK.NIRLMGEDEKPAKENSEGAGAKASSA.VLVS
Retrocopy QQLQAKGKELNEFREKQNIRLMGEDEKPAKENSEGAGAKASSARVLVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1293 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000004588	1 retrocopy	retro_dord_362,
Myotis lucifugus	ENSMLUG00000004526	1 retrocopy	retro_mluc_1293 ,
Mus musculus	ENSMUSG00000006412	1 retrocopy	retro_mmus_307,
Tupaia belangeri	ENSTBEG00000015982	1 retrocopy	retro_tbel_2807,
Tursiops truncatus	ENSTTRG00000009181	1 retrocopy	retro_ttru_1756,