RetrogeneDB - Retrocopy retro_mluc

                        
>retro_mluc_1297
ATGACCACCGAGGAACCTCTTCCCAAAAAGGTTCGACTGAGTGAGACAGACTTTCAAGTTATGGCACGAGATGAGTTGAT

TTTAAGATGGAAAGAGTATGAAGCATATGTGCAGGCTTTGGAGGACAAGTACACAGACCTGAACTCCAATGTAACTGGCT

TAAGGGAGTCAGCAGAAAAACTACAGCAACAACACGAAGCGTCTGCACACAGAAAAGACATCCTTGTCATGCGACTAGCA

ACCAAGGAGCGAGAGGTCCAAGAGTACACTGCTCAAATCCAGTACCTCCAGCAAGTCCAGCAGCCCGGTGCTGCCCCGCT

GACATCAACAGCGGCAGACCCCGCGATCAACTTCTTTTTCCTAAAAATGAGAGGTGAGCTGGACGAGACTAAAGACAAAC

TGGAACAAACCCGGAATGAACTGAGTGCCTGGAAGTTCACTCCTGAAAGCCAAACAGGCAAAGACGTCATGGTGAAATGC

CGAAGGCTTCTCCAGGAGAATCAGCAGCTTGGAAGGCAGGTGAACCGGCAACTTATTGCGCAACTTGAAGCAGAGTTGGC

TTTACAGAAGAAATACAGTGAGGAGCTTAAAAGCAGCCGGAGTGAACTGAATGACTTCATCATTCAGCTGGAGGAAGAAG

TAGAGGATATGCAGAGTACCATTCTAGTTCTACAGCAGCAACTGAAGGAGACGCGCCAGCAGTTGGCTCAGTACCAACAG

CAGCAGGCTCAAGCCCCAGCCCCAGGTACCAGCAGGACTACATCTGAGCCTGTGGGACAGGCAGAGGCCACAGGTAAAGA

CTGCAGTCGGCTGACCAATGGACCAAGCAACGGCAGTTCCTCCCGGCTGAGGACGTCTGGGTCTGGAGGTCACAGGGCGG

GGGACACGACCGAAGATGGCTTTCCTTCTTCTCCAGGGACTGGTAAGAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGC

AAAGGAGGTAGTAGTTACATAAACCAACTCAGTGCGGGATAGGGAAGTATAGTCTCTCCCACGGGCAGTGAAAACTCTCT

CACACAGTGAAACGACATAGACTCCAATCATGACTCTCAAAAGGAAAAAACT

ORF - retro_mluc_1297 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	82.29 %
Parental protein coverage:	92.68 %
Number of stop codons detected:	2
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
MT.EEPLPKKVRLSETDF.VMARDELILRWK.YEAYVQALE.KYTDLNSN.VTGLRES.EKL.QQ...SA
RetrocopyMTTEEPLPKKVRLSETDFQVMARDELILRWKEYEAYVQALEDKYTDLNSN-VTGLRESAEKLQQQHEASA
ParentalRRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
.R..ILVMRLATKE.E.QE.T.QIQYL.QVQQP..A.L.ST..DPAIN.FFLKM.GEL..TKDKLEQ..N
RetrocopyHRKDILVMRLATKEREVQEYTAQIQYLQQVQQPGAAPLTSTAADPAINFFFLKMRGELDETKDKLEQTRN
ParentalELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
ELSAWKFTP.SQTGK..M.KCR.L.QENQ.LGRQ.....IAQLEAELALQKKYSEELKSS..ELNDFIIQ
RetrocopyELSAWKFTPESQTGKDVMVKCRRLLQENQQLGRQVNRQLIAQLEAELALQKKYSEELKSSRSELNDFIIQ
ParentalLDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTSSEPVGQAEAPGKDCSRLANGPSNG
L.EEVE.MQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS.EPVGQAEA.GKDCSRL.NGPSNG
RetrocopyLEEEVEDMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS-EPVGQAEATGKDCSRLTNGPSNG
ParentalSSSRPRTSGSGCHREGDTTEDGFPSSPGNGNKASNSSEERTGKGGSSYVNQLSAGYESVDSPTGSENSLT
SSSR.RTSGSG.HR.GDTTEDGFPSSPG.G.KASNSSEERTGKGGSSY.NQLSAG..S..SPTGSENSLT
RetrocopySSSRLRTSGSGGHRAGDTTEDGFPSSPGTGKKASNSSEERTGKGGSSYINQLSAG*GSIVSPTGSENSLT
ParentalHHLNDTDSNHDPQEEKT
...ND.DSNHD.Q.EKT
Retrocopy-Q*NDIDSNHDSQKEKT

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_1297 was not experimentally validated.

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007974	1 retrocopy	retro_btau_486,
Canis familiaris	ENSCAFG00000023207	2 retrocopies	retro_cfam_188, retro_cfam_229,
Myotis lucifugus	ENSMLUG00000000721	1 retrocopy	retro_mluc_1297 ,

	RetrogeneDB ID:	retro_mluc_1297
Retrocopy location	Organism:	*Microbat (Myotis lucifugus)*
	Coordinates:	GL429816:5511772..5512864(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	WTAP
	Ensembl ID:	ENSMLUG00000000721
	Aliases:	None
	Description:	None

Parental	MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQQQQESA
	MT.EEPLPKKVRLSETDF.VMARDELILRWK.YEAYVQALE.KYTDLNSN.VTGLRES.EKL.QQ...SA
Retrocopy	MTTEEPLPKKVRLSETDFQVMARDELILRWKEYEAYVQALEDKYTDLNSN-VTGLRESAEKLQQQHEASA

Parental	RRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQN
	.R..ILVMRLATKE.E.QE.T.QIQYL.QVQQP..A.L.ST..DPAIN.FFLKM.GEL..TKDKLEQ..N
Retrocopy	HRKDILVMRLATKEREVQEYTAQIQYLQQVQQPGAAPLTSTAADPAINFFFLKMRGELDETKDKLEQTRN

Parental	ELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQ
	ELSAWKFTP.SQTGK..M.KCR.L.QENQ.LGRQ.....IAQLEAELALQKKYSEELKSS..ELNDFIIQ
Retrocopy	ELSAWKFTPESQTGKDVMVKCRRLLQENQQLGRQVNRQLIAQLEAELALQKKYSEELKSSRSELNDFIIQ

Parental	LDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTSSEPVGQAEAPGKDCSRLANGPSNG
	L.EEVE.MQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS.EPVGQAEA.GKDCSRL.NGPSNG
Retrocopy	LEEEVEDMQSTILVLQQQLKETRQQLAQYQQQQAQAPAPGTSRTTS-EPVGQAEATGKDCSRLTNGPSNG

Parental	SSSRPRTSGSGCHREGDTTEDGFPSSPGNGNKASNSSEERTGKGGSSYVNQLSAGYESVDSPTGSENSLT
	SSSR.RTSGSG.HR.GDTTEDGFPSSPG.G.KASNSSEERTGKGGSSY.NQLSAG..S..SPTGSENSLT
Retrocopy	SSSRLRTSGSGGHRAGDTTEDGFPSSPGTGKKASNSSEERTGKGGSSYINQLSAG*GSIVSPTGSENSLT

Parental	HHLNDTDSNHDPQEEKT
	...ND.DSNHD.Q.EKT
Retrocopy	-Q*NDIDSNHDSQKEKT

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_mluc_1297