RetrogeneDB ID: retro_mluc_1340

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429825:758066..758360(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PEA15
• Ensembl ID: ENSMLUG00000001275
• Aliases: None
• Description: None

Sequence

>retro_mluc_1340
AGCTCAAATCAGGAGGACATTCCCAGGTGAGAAGCCTGAGGAGATCACAACAGGCAGTGCCTGGTTTAGCTTCCTGGAAA
GCCACAACAAGCTGGACAAAGACAACCTCTCCTACACTGAGCACATCTTTGAGATCTCTGGCTATCCTGACCTACCCACT
ATGGTGGTTGACTATACAGCCCATGTTCTTAAGGTCTCTGAGGAAGAGGAGCTGGTTACCAAGCTAACCCACATCCCCAG
TAGTACAAATATATTATCTGGCAGCCCTCTGAGAAAGAGATAATAAAACTGGCT

Alignment

ORF - retro_mluc_1340 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.47 %
• Parental protein coverage: 75.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SACKEDIP-SEKSEEITTGSAWFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEED
          S...EDIP..EK.EEITTGSAWFSFLESHNKLDKDNLSY.EHIFEIS..PDL.TMVVDY...VLK.SEE.
Retrocopy SSNQEDIP>GEKPEEITTGSAWFSFLESHNKLDKDNLSYTEHIFEISGYPDLPTMVVDYTAHVLKVSEEE

Parental  ELDTKLTRIPSAK-KYKDIIRQPSEEEIIKLA
          EL.TKLT.IPS...KY..II.QPSE.EIIKLA
Retrocopy ELVTKLTHIPSST<KY--IIWQPSEKEIIKLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1340 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001275	1 retrocopy	retro_mluc_1340 ,
Mus musculus	ENSMUSG00000013698	1 retrocopy	retro_mmus_859,
Rattus norvegicus	ENSRNOG00000046996	1 retrocopy	retro_rnor_2300,