RetrogeneDB ID: retro_mluc_1383

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429829:6233949..6235600(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025864
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: WDR70
• Ensembl ID: ENSMLUG00000004998
• Aliases: None
• Description: None

Sequence

>retro_mluc_1383
ATGGAGCGCCCGGGGCCCAGCGAAGGTGCTGAGACGTCGGGACCAGACCCGCAGCTGGCGGTCACCATGGGCTTCACGGG
GTTCGGGGGAAAAAGCTCGTACATTTGATTTGGAAGCAATGTTTGAACAGACTCGAAGAACAGCTGTGGAAAGAAGTCGG
AAAACACTGGAGGCAAGAGAAAAAGAGGAAGAAATGAACAGAGAGAAAGAATTAAGAAGGCAAAATGAAGATATTGAACC
TACATCTTCAGGCTCAGATGTGGTCAGAGATTGCTCTCAATCATCTTCCAGTGATACAAGCAGTAGTGGAAGTGAAGCGA
GTTCTGATTCCTCTGATGATGAGTTGATTGGCCCTCCTTTACCCCCTACCATGGCAGAAGAACCTGTTGATCGTATGGAG
CAAGCTATTGGTCGTTTACCTCCACCTCTTCATGAGGAAGAGGAAGATGGTGATGATGATGATGATGGTGGTGGTGGTGG
TGATTCAGAAGAGGAAAATTCTGTTCAAAAGATCCCTGATTCTCATGAAATAACGCTGAAGCATGGCACTAAAACAGTTT
CTGCTTTGGGTCTGGACCCCTCAGGTGCCCGCTTGGTGACAGGGGGATACGACTATGATGTTAAGTTTTGGGATTTTGCT
GGAATGGACGCTTCTTTTAAGGCATTTCGATCCCTTCAACCCTGTGAATGCCATCAGATCAAGTCATTGCAGTATAGTAA
CACAGGAGACATGATTCTTGTTGTATCCGGAAGCTCTCAAGCCAAAGTGATTGACAGAGATGGTTTTGAAGTAATGGGAT
GTATAAAAGGAGACCAGTATATTGTGGACATGGCCAACACCAAGGGTCACACAGCAATGCTTCATACTGGCTCATGGCAT
CCCAAAATAAAGGGAGAATTTATGACTTGCTCAAATGATGCGACTGTGAGGACATGGGAAGTTGAAAATCCAAAGAAACA
AAAAAGTGTGTTTAAACCACGGAGGATGCAGGGTAAAAAAGTGATTCCCACCACGTGCACATACAGTAGAGATGGAAACC
TCATAGCAGCTGCCTGCCAGAACGGAAGCATACAGATCTGGGACCGGAATCTGACGGTTCATCCTAAATTCCACTACAAA
CAGGCTCATGACCCGGGTACAGACACTTCTTGCGTGGCTTTTTCCTATGATGGTACTGTCCTTGCCTCTCGTGGAGGTGA
TGATACATTAAAATTATGGGACATCCGACAGTTTAATAAGCCACTTTTTTCAGCCTCGGGTCTTCCCACCATGTTTCCAA
TGACTGACTGCTGTTTCAGTCCAGATGATAAACTCATAGTAACTGGCACATCTGTTCAAAGGGGATGTGGCAGCGGCAAA
CTCGTTTTCTTTGAGCGCAGAACTTTCCAGAGGGTGTATGAAATAGACATCCCGGACGCGAGTGTGGTCCGCTGCCTGTG
GCATCCAAAGCTGAACCAGATCATGGTGGGAACTGGAAACCGGCTGGCGAAAGTCTATTATGACCCCAACAAGAGTCAGA
GGGGAGCAAAATTATGTGTGGTCAAAACCCAGCGGAAGGCGAAGCAAGCCGAGACTCTGACCCAGGACTACATCATCACC
CCTCACGCCTTGCCGACGTTCCGTGGAGCACCAGGAAGCAGCTGGAGAAGG

Alignment

ORF - retro_mluc_1383 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.15 %
• Parental protein coverage: 84.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MERPGPSEAPVTGAETSGPDPQLAVTMGFTGFG-KKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEM
          MERPGPSE....GAETSGPDPQLAVTMGFTGFG..KARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEM
Retrocopy MERPGPSE----GAETSGPDPQLAVTMGFTGFG>EKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEM

Parental  NREKELRRQNEDIEPTSSGSNVVRDCSKSSSSDTSSSGSEESSDSSDDELIGPPLPPTMAEEPVDRMEQA
          NREKELRRQNEDIEPTSSGS.VVRDCS.SSSSDTSSSGSE.SSDSSDDELIGPPLPPTMAEEPVDRMEQA
Retrocopy NREKELRRQNEDIEPTSSGSDVVRDCSQSSSSDTSSSGSEASSDSSDDELIGPPLPPTMAEEPVDRMEQA

Parental  IGRLPPPLH--EEEEDGDDDDDGGDSEEEENPVQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDY
          IGRLPPPLH..EE..............EEEN.VQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDY
Retrocopy IGRLPPPLHEEEEXXXXXXXXXXXXXSEEENSVQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDY

Parental  DVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIV
          DVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVM.CIKGDQYIV
Retrocopy DVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMGCIKGDQYIV

Parental  DMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDG
          DMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPR.MQGKKVIPTTCTYSRDG
Retrocopy DMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPRRMQGKKVIPTTCTYSRDG

Parental  NLIAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVAFSYDGTVLASRGGDDTLKLWDIRQFNKPL
          NLIAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVAFSYDGTVLASRGGDDTLKLWDIRQFNKPL
Retrocopy NLIAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVAFSYDGTVLASRGGDDTLKLWDIRQFNKPL

Parental  FSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERRTFQRVYEIDITDASVVRCLWHPKLN
          FSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERRTFQRVYEIDI.DASVVRCLWHPKLN
Retrocopy FSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERRTFQRVYEIDIPDASVVRCLWHPKLN

Parental  QIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPMFREPRQRSTRK
          QIMVGTGN.LAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALP.FR.....S.R.
Retrocopy QIMVGTGNRLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPTFRGAPGSSWRR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1383 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004998	1 retrocopy	retro_mluc_1383 ,