RetrogeneDB ID: retro_mluc_1421

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429834:1157977..1159032(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RUVBL1
• Ensembl ID: ENSMLUG00000004254
• Aliases: None
• Description: None

Sequence

>retro_mluc_1421
GGTTTGGCCAAGCAGGCGGCCTCAGGGCTCCTGGGCCAGGAGCATGTGCGAGAGGCATGTGGTGTGACAGTAGAATTAAC
CAAAGGCAAGGAAATGGCTGGAAGAGCTGTCTTGTTGGCAGGACCTCCAGGAACTGGCAAGACAGCTCTAGCTCTCACTA
TTGCTCAGGAGCTGGGAAGTAAGGTGCCTTTCTGCTCCATCGTGGGAGTGAAGTTTACAGAGATCAAGAAGACAGAAGTG
ATGATGAGCTTCCACAGGGCCTTTGGGCTGTGGATAAAGGAAACCAAGGAGGTTTATGAAGGTGAAGTCGAAGAACTAAC
CCGGTATGAGACAGAAACCCCATGGGAGGGTATGGTAAAACCAATCGTCATGTAATCATAGGACTCAAAACAGCCAAAGG
AACCAAACAATTGAAACTGGACCCCAGCATTTTTGAAAATTTGCAGAAAGAGTGAGTGGAGGCTGGAGAAGTGATTTACA
TTGAAGTCAACAGTGGAGCTGTGAAGAGGCAGGGCAGATGTGATACCTATGCCACAGAATTTGACCTTGAAGTTGAAGAG
CACGTCCCCTTGCCAAAGGGGGATGTGCACAAGAAGAAAGAAATCATCCAGGATGTGACCTGGCATGACTTGGATGTGGC
CAGTGCCAGGCCCCAGGAGGGACAAGACATCCTGTCTATGCTGGGCCAGTTAATGAAGCCAAAGAGGACAGACATCACAG
ACAAACTTCGAGGGGAGATTAACAAGGCGGTGAACAAGTACATTGATCAGGGCATTGCTGAGCTGGTCCCAGGTGTGCTC
TTAGTTGATGAGGTCCACATGCTGGATAGCGAGTGCTTCACCTACCTGCACCAGGCCCTGGAGTCTTCTATTGCCCCCAG
CGTCATCTTTGCATCTAACCGAGGCAACTGTGTCATCAGGGGTACTGAGGGTATCACCTCTCCTCATGGCATCCCCCTCG
ACCTTCTGGACAGAATGATGATCATCAGAACCATGCTGTATACTCCGCAGGAAATGAAACAATTCATTAAAATTGTCAGA
TAGAGGGAATCAACA

Alignment

ORF - retro_mluc_1421 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.11 %
• Parental protein coverage: 77.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GLAKQAAAGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGS
          GLAKQAA.GL.GQE..REACGV.VEL.K.K.MAGRAVLLAGPPGTGKTALAL.IAQELGSKVPFC..VG.
Retrocopy GLAKQAASGLLGQEHVREACGVTVELTKGKEMAGRAVLLAGPPGTGKTALALTIAQELGSKVPFCSIVG-

Parental  EVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETE-NPMGGYGKTISHVIIGLKTAKGTK
          .V..TEIKKTEV.M..F.RA.GL.IKETKEVYEGEV.ELT..ETE.NPMGGYGKT..HVIIGLKTAKGTK
Retrocopy -VKFTEIKKTEVMM-SFHRAFGLWIKETKEVYEGEVEELTRYETE<NPMGGYGKTNRHVIIGLKTAKGTK

Parental  QLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDV
          QLKLDPSIFE.LQKE.VEAG.VIYIE.NSGAVKRQGRCDTYATEFDLE.EE.VPLPKGDVHKKKEIIQDV
Retrocopy QLKLDPSIFENLQKE*VEAGEVIYIEVNSGAVKRQGRCDTYATEFDLEVEEHVPLPKGDVHKKKEIIQDV

Parental  TLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLD
          T.HDLDVA.ARPQ.GQDILSM.GQLMKPK.T.ITDKLRGEINK.VNKYIDQGIAELVPGVL.VDEVHMLD
Retrocopy TWHDLDVASARPQEGQDILSMLGQLMKPKRTDITDKLRGEINKAVNKYIDQGIAELVPGVLLVDEVHMLD

Parental  IECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQ--KII
          .ECFTYLH.ALESSIAP.VIFASNRGNCVIRGTE.ITSPHGIPLDLLDR.MIIRTMLYTPQEMKQ..KI.
Retrocopy SECFTYLHQALESSIAPSVIFASNRGNCVIRGTEGITSPHGIPLDLLDRMMIIRTMLYTPQEMKQFIKIV

Parental  KIRAQT
          ..R..T
Retrocopy R*REST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1421 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004254	1 retrocopy	retro_mluc_1421 ,
Mus musculus	ENSMUSG00000030079	1 retrocopy	retro_mmus_493,
Ochotona princeps	ENSOPRG00000011261	1 retrocopy	retro_opri_1115,
Rattus norvegicus	ENSRNOG00000013195	2 retrocopies	retro_rnor_2883, retro_rnor_424,