RetrogeneDB ID: retro_mluc_1439

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429838:2943333..2944094(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012093
• Aliases: None
• Description: None

Sequence

>retro_mluc_1439
GAACAGTGACTAGCCCCAAATACAGTACCTATGGATCCCATGTTATGTACCAAATAACTGAGCTCAGCTGCCTACAACAG
ATATGACCAGGGGAGAGTCAAAGGAATAGAAAGAATGGGAGGCTCCAAAACGGACACTCCAGTGCCTACCCCTGTAGTCC
CCGGAAATCTGTAACTGAGAATGAAGCATCTGCCCGAAGGACTCAAGCTCCTGAACACAGCCCGTTCTAGACCAGTTTCT
CAAGCCAGGCTTCCCCAAACCTAGAAGAAAGGATCTCGAGTACCCATTGGGAGCTACCACCTCTTTAATAACCATGCTAA
TGCTAAAGATCTTCTACAGGGTCTGAAATGTGTCCTATCATTTGAAAACCAAGATTGCCAATGAAAAAATGAGACCATAA
TTCAGAGCAGACAAGAGCAGATGCAGCCAGAGGCCACTAAGCTAGTGTCGGAGCTCCTTACAGAGCAGACCGGCCCTGAG
GTGCATGCTTTAAGTGGTGGGACCCAGCTGTGGCAGCTTTTGTACAGGATCCTGCCTGTTAGTTCAAAGATTGGCTTTTG
CCTGATGGATCACCCGTTGATATATTTGCCAAAACTGAAGGCTTTCGTCTCAAGTATGATGAAGTTTGTCTAAATGCAAT
TGTTCAGAAATGGGATGGAATGGTGTTAAAACTCAGCTATCACAGCCTTTGAACAGATCCGCTTCTTACAGTTCTGAGAA
ACCTTTACTGCTACACAATAAAGCATACATCCTGCTTAAGA

Alignment

ORF - retro_mluc_1439 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.59 %
• Parental protein coverage: 54.41 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  EQRPAPNAAPVDPTLRTKQPIPAAYNRYDQERFKGKEETEGFKIDT-MGTYHGMTLKSVTEG-ASARKTQ
          EQ..APN..P.DP.L.TK....AAYNRYDQ.R.KG.E...G.K.DT....Y.....KSVTE..ASAR.TQ
Retrocopy EQ*LAPNTVPMDPMLCTK*LSSAAYNRYDQGRVKGIERMGGSKTDT<SSAYPCSPRKSVTENEASARRTQ

Parental  TPA-AQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITML-NAKDLLQDLKFVPSDEKKKQGCQREN
          .P...QPV.........P....K....P......ATTSLITML.NAKDLLQ.LK.V.S.E...Q.CQ..N
Retrocopy APE<TQPVLDQFLKPGFPKPRRKDLEYPL----GATTSLITML<NAKDLLQGLKCVLSFEN--QDCQ*KN

Parental  ETLIQRRKDQMQPGGTAL-SVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIF
          ET.IQ.R..QMQP..T.L.SV..PYR..D.P.......WD..VA.FVQ.PA..FK...WLLPDGSPVDIF
Retrocopy ETIIQSRQEQMQPEATKL<SVGAPYRA-DRP*GACFKWWDPAVAAFVQDPAC*FKD--WLLPDGSPVDIF

Parental  AKIKAFHLKYDEVRLDPNVQKWDVTVLELSYHKRHLDRPVFLRFWETLDRYMVKHKSHLR
          AK...F.LKYDEV.L...VQKWD..VL.LSYH....D....L.....L..Y..KH.S.LR
Retrocopy AKTEGFRLKYDEVCLNAIVQKWDGMVLKLSYHSL*TD--PLLTVLRNLYCYTIKHTSCLR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1439 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008675	2 retrocopies	retro_chof_2535, retro_chof_747,
Myotis lucifugus	ENSMLUG00000012093	2 retrocopies	retro_mluc_1439 , retro_mluc_2152,
Monodelphis domestica	ENSMODG00000012222	1 retrocopy	retro_mdom_263,
Nomascus leucogenys	ENSNLEG00000018050	1 retrocopy	retro_nleu_2818,
Oryctolagus cuniculus	ENSOCUG00000016332	1 retrocopy	retro_ocun_302,
Otolemur garnettii	ENSOGAG00000000351	1 retrocopy	retro_ogar_767,