RetrogeneDB ID: retro_mluc_1548

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429859:3975709..3976478(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000026951
• Aliases: None
• Description: None

Sequence

>retro_mluc_1548
TTTCCAGGCGTCAGGGCAGCTCACTACTGGATCTGCGTCTTGGGGTCAAGCTGCCTGGGATCCCAGGGAGCAATACTTCA
CACTATAGTACAAAGTTAAGTGAAAGGCGTTTTCAACCTTCTTATGGTTTTAACCTGATTACTCCTTATTTTTGACTTTT
GGAAAACAAATATAATAGTCTCCATGATCCACATTTAAGAGCATACCATTCATGCAAAGATATCCTGAAGAGATTAAACA
AAGATGGCTACTTCACCAGCAATAATGAAGTTGTATGTGCCTGGATGGAATTGAATAAGTACAGGTAATATCTTACCAGT
TTAAAATTACTAGTAGACTTGGAAAGAAATTATGAAAGAGAACAAAATTGCTTGCAAAATAAGTAAATAAGCTACAAGAA
AACAATAAACTACCTGGACTTTCTGATGTTGCACAGTTTCAAAATTGGTTGTTATCGGAGGATACCCAAACTTTTAAGGA
TCAGGAGCGATTAGTAAGGCTTAGATATTTGATATGATAAGTAGGGAGTTAGAACAATATGAGCTCATAAGAGCAGCACC
TACTCTGGATGGACAGAGAAGAAAGACAACAGTGGGAACGAACAAGAAGAAAACTTAGTCTTCACAGAAAAATTGAAGAG
AAATGGAAGACAAAAGAGATGTTACTTTTGACAAGGATTGGAAAAGACGTTAAAAGAGAAGCTAGGATAGAGGAACAATG
GCATAGAAACAGAGAAGACAGTGACAAGAAGACAAGCCTTTTAGAGAAA

Alignment

ORF - retro_mluc_1548 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.34 %
• Parental protein coverage: 86.87 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  FPGCGVA-ALLDLPLEVKLPVIPGSNNLYYTTKLNKKLFQPSYGFNLTDPYCRLLDNQYNSLHDPHLRAY
          FPG...A..LLDL.L.VKLP.IPGSN...Y.TKL....FQPSYGFNL..PY..LL.N.YNSLHDPHLRAY
Retrocopy FPGVRAA<SLLDLRLGVKLPGIPGSNTSHYSTKLSERRFQPSYGFNLITPYF*LLENKYNSLHDPHLRAY

Parental  HSREDIRRRLKKGGYITRNNEVICNLTEFNKYRQYLTSLKL--DFERHYVKEQG-MLAKQINKLQLNNQL
          HS..DI..RL.K.GY.T.NNEV.C...E.NKYR.YLTSLKL..D.ER.Y..EQ...LAK..NKLQ.NN.L
Retrocopy HSCKDILKRLNKDGYFTSNNEVVCAWMELNKYR*YLTSLKLLVDLERNYEREQN<LLAK*VNKLQENNKL

Parental  RGLPDDAQFQNWLLWEENQSFKDQEPLEMPSYL-DKIRMKLDQCGCTREEQRL-LWLEREKRRQQEQARR
          .GL.D.AQFQNWLL.E..Q.FKDQE.L....YL.D.I...L.Q....R....L..W.E.......EQ...
Retrocopy PGLSDVAQFQNWLLSEDTQTFKDQERLVRLRYL<DMISRELEQYELIRAAPTL<GWTEKKDNSGNEQ-EE

Parental  KHILHRKFEEEWKKK-EMLLLTKSAEGVQKEAGLEIQRRRNRGEGDKKNQNFLEK
          ......K.......K.EMLLLT.....V..EA..E.Q..RNR...DKK....LEK
Retrocopy NLVFTEKLKRNGRQK<EMLLLTRIGKDVKREARIEEQWHRNREDSDKKT-SLLEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1548 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000026951	1 retrocopy	retro_mluc_1548 ,