RetrogeneDB ID: retro_mluc_1553

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429861:2652953..2653412(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026116
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002256
• Aliases: None
• Description: None

Sequence

>retro_mluc_1553
CTGATGCCTGGGCAGCTCCCGGACCCTTCCATGACTGCGGCTCTCTGCCAGGGCTCGGCCCCCTGACCGGACTCCCCAGC
TCCGCCCTGACTGCAGAGGAGCTGAAATACGCTGACATCCAGAACATCGGGGCCATGATCACCCCTTTGCACTTCCTGGA
GGTGAAACTGGGCAAGAGGCCTCAACCTGTGAAAAGCGAGCTAGATGAGGAAGAGGAGCAGCGCCGGGAAAAGAACAAAG
TGGCGGCAGCCCCATGCCAGAACAAGAAGAAGGAGCAGAAGGAGTTTCTGCAGTGGGAAACTGAGTGGCTGGAGCTGAAA
ACCCAGATGGAGGAGCAGGAGTGGCAGCAGCTCATCCTGATACTCAACCAGCATCGCCCCACCTGCATCGTCAGGACCGA
CAGCGTTAAGACCCCCAACTCCAGAAGGCAACCCACTGCTGGAGCAGCTGGAAAAGAAG

Alignment

ORF - retro_mluc_1553 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.36 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MMPGQIPDPSVTA-GSLPGLGPLTGLPSSALTAEELKYADIRNIGAMIAPLHFLEVKLGKRPQPVKSELD
          .MPGQ.PDPS.TA.GSLPGLGPLTGLPSSALTAEELKYADI.NIGAMI.PLHFLEVKLGKRPQPVKSELD
Retrocopy LMPGQLPDPSMTA<GSLPGLGPLTGLPSSALTAEELKYADIQNIGAMITPLHFLEVKLGKRPQPVKSELD

Parental  EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKQERQQLILMLNRHRPTC
          EEEE....RREKNKV.AA.....KK......Q.E....E....ELKTQ.EE..QE.QQLIL.LN.HRPTC
Retrocopy EEEEQ---RREKNKV-AAAPCQNKKKE----QKEFLQWETEWLELKTQMEE--QEWQQLILILNQHRPTC

Parental  IVRTDSVKTPDS-EGNPLLEQLEKK
          IVRTDSVKTP.S.EGNPLLEQLEKK
Retrocopy IVRTDSVKTPNS>EGNPLLEQLEKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1553 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002256	13 retrocopies	retro_mluc_1, retro_mluc_1530, retro_mluc_1553 , retro_mluc_1840, retro_mluc_185, retro_mluc_2066, retro_mluc_2101, retro_mluc_2481, retro_mluc_343, retro_mluc_598, retro_mluc_927, retro_mluc_971, retro_mluc_988,
Nomascus leucogenys	ENSNLEG00000016475	1 retrocopy	retro_nleu_2748,