RetrogeneDB ID: retro_mluc_1564

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429862:3429513..3430111(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000004215
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DMRTC2
• Ensembl ID: ENSMLUG00000026555
• Aliases: None
• Description: None

Sequence

>retro_mluc_1564
GGAAAGGAGAACATAGCGCCCCAGCCTCAGACCCTCCATGGGGCAGTCCCACTGGCACTGACCGCCCCTGGGAAGGAGAA
TTCCCAGGGGCCTCTGCTGCTTAGCCATCCCCCAGAACCCTTGCCTTTGCCCTGGACTCCAAGTGCTTGGACCCCTGGAC
ATTGGCTGCCTCCAGGCCTTTCCATGCCACCCCCAGTCGTGTGCCGCTTGCTATGCCAAAGCCTGTTGTCCCTCTGCATC
CCTTCCCTGTCTTTGACCCTGGTACTTCCCTCCAGCTGCCCACTCATGGGCCCTTCCCAAACTGCCCAGGATCTCACCCA
ATACCGACTGCTCCTCTTCCTGAGGAACCCCAAGGGCCCTCTGCCCTGCCCCACACATGCTCAGCTTTGATACTTCAGCC
CTGTGGTACCCCAGACCCTCTTCTGCTTCAACCACAGGCCCCCGAGCCTCTCGCCTGGCCTGGACCTCTGCCTCCGCAGA
GCGGCAGCTGCAGCGGGAGGCAGCTGAGGCTCTTGTGGGGCTGAAAGATTCATCCCAGGCTCCCTGCCTGACCCCTTCTG
TCCCCACTAACTCTGCCTGGATCTCCCTGCTCCATCCA

Alignment

ORF - retro_mluc_1564 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.06 %
• Parental protein coverage: 53.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GKENIAPQPQTLHGAVPLALTAPGKENSQGSLLLSRPPEPLPFPWTPSAWTPGHWLPPGLSMPPPVVCRL
          GKENIAPQPQTLHGAVPLALTAPGKENSQG.LLLS.PPEPLP.PWTPSAWTPGHWLPPGLSMPPPVVCRL
Retrocopy GKENIAPQPQTLHGAVPLALTAPGKENSQGPLLLSHPPEPLPLPWTPSAWTPGHWLPPGLSMPPPVVCRL

Parental  LCQ-KPVVPLHPFPGFDPGTSLRLPTHGPLPNCPGSHPILTAPLPGEPQGPSALPHRCSTLILQPCGTPD
          LCQ.KPVVPLHPFP.FDPGTSL.LPTHGP.PNCPGSHPI.TAPLP.EPQGPSALPH.CS.LILQPCGTPD
Retrocopy LCQ<KPVVPLHPFPVFDPGTSLQLPTHGPFPNCPGSHPIPTAPLPEEPQGPSALPHTCSALILQPCGTPD

Parental  PLLLQPQA-PRASRLAWTSASAERQLQREAAEALVGLKDSSQAPCLTPSVPTNSAWISLLHP
          PLLLQPQA.PRASRLAWTSASAERQLQREAAEALVGLKDSSQAPCLTPSVPTNSAWISLLHP
Retrocopy PLLLQPQA<PRASRLAWTSASAERQLQREAAEALVGLKDSSQAPCLTPSVPTNSAWISLLHP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1564 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000026555	1 retrocopy	retro_mluc_1564 ,