RetrogeneDB ID: retro_mluc_1575

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429864:4427315..4428641(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SNRK
• Ensembl ID: ENSMLUG00000001785
• Aliases: None
• Description: None

Sequence

>retro_mluc_1575
ATGGCAGGACTCAAGCGAGGATACGATGGGAAGATTGCTGGGTTGTATGATCTGGATAAAACCTTGGGCCGGGGCCACTT
CGCAGTGGTTAAGCTGGCCAGGCATGTCTTCACGGGTGAAAAGGTGGCCGTAAAAATTATTGACAAGACAAAGTTGGACA
CACTAGCCACTGGTCGCCTTTTCCAAGAAGTGAGGTGCATGAAACTGGTGCAGCATCCCAACGTCGTGCGTCTCTGTGAA
GTGATTGACACCCAGACCAAACTGTATCTCATTCTGGAACTTGGGGATGGAGGAGATATGTTCGATTACATAATGAAACA
CGAGGAGGGACTTAATGAAGACTTGGCCAAGAAGTACTTTGCTCAGATAGTTCATGCCCTATCTTATTGCCATAAACTCC
ACGTGGTTCACAGGGACTTGAAACCTGAGAATGTGGTCTTCTTTGAAAGACAAGGCCTTGTGAAGCTGACGGACTTTGGT
TTCAGCAACAAATTTCAGCCGGGGAAGAAGCTCACTACCAGTTGTGGGTCTCTCGCATATTCTGCTCCAGAAATTCTGCG
TGGGGATGAGTATGATGCTCCTGCAGTAGATATATGGAGTCTGGGAGTGATCCTTTTCATGTTGGTATGCGGGCAGCCAC
CCTTTCAAGAGGCCAATGACAGTGAAACATTGACAAGGATCATGGATTGTAAATACACGGTCCCATCCCATGTGTCTAAA
GAGTGTAAAGACCTGATCGCCCGGATGCTACAGACAGATCCCGAGAGAAGGGCCTCTTTAGAAGAGATTGAAAACCATCC
TTGGCTTCAGGGTGTGGACCCTTCGCCAGCCACCAAGTATAACATCCCCCTGGTGTCCTACAAGAAGCTCTCAGAGGAGG
AGCACAACAGCATCATTCAGCGCATGGTGCTCGGGGACATAGCGGATCGAGATGCCATTGTCGAAGCCCTGGAAACCAGC
AGGTACAACCACATCACGGCCACGTACCTCTTGCTCGCTGAACGGATCCTGAGGGAGAAGCAAGAGAAAGAAATCCAAAC
CAGGTCCGCCAGCCCCAGCAATATCAAGGCCCAGTTTAGGCAGTCATGGCCCACCAAAATCAACGTGCCCCAGGACCCAG
AGGATCACCTCACTGCCACTCCCCTGTCCCACGCGACCGTCCCTCCGGCTCCTGCGCGGGCTGCCAACAGTGTCCTCAAT
GGCCACCGGAGCAAAGGCCGGTGTGACATGGCCAAGAAAGATGACCTCCCCGAGTTGGCTGGGCTGGCATTGTCCACGGT
GCCGCCGGCGAGCTTGAAGCCCGTGGCCAGTGGGCGGAAGTGTCTT

Alignment

ORF - retro_mluc_1575 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.57 %
• Parental protein coverage: 59.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGFKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLATGHLFQEVRCMKLV
          MAG.KRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVK.IDKTKLDTLATG.LFQEVRCMKLV
Retrocopy MAGLKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKIIDKTKLDTLATGRLFQEVRCMKLV

Parental  QHPNIVRLYEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDL
          QHPN.VRL.EVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEDLAKKYFAQIVHA.SYCHKLHVVHRDL
Retrocopy QHPNVVRLCEVIDTQTKLYLILELGDGGDMFDYIMKHEEGLNEDLAKKYFAQIVHALSYCHKLHVVHRDL

Parental  KPENVVFFEKQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPAVDIWSLGVILFMLVC
          KPENVVFFE.QGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEIL.GDEYDAPAVDIWSLGVILFMLVC
Retrocopy KPENVVFFERQGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILRGDEYDAPAVDIWSLGVILFMLVC

Parental  GQPPFQEANDSETLTMIMDCKYTVPSHVSKECKDLITRMLQRDPKRRASLEEIENHPWLQGVDPSPATKY
          GQPPFQEANDSETLT.IMDCKYTVPSHVSKECKDLI.RMLQ.DP.RRASLEEIENHPWLQGVDPSPATKY
Retrocopy GQPPFQEANDSETLTRIMDCKYTVPSHVSKECKDLIARMLQTDPERRASLEEIENHPWLQGVDPSPATKY

Parental  NIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILREKQEKEIQTRSA
          NIPLVSYK.LSEEEHNSIIQRMVLGDIADRDAIVEALET.RYNHITATY.LLAERILREKQEKEIQTRSA
Retrocopy NIPLVSYKKLSEEEHNSIIQRMVLGDIADRDAIVEALETSRYNHITATYLLLAERILREKQEKEIQTRSA

Parental  SPSNIKAQFRQSWPTKIDVPQDLEDDLTATPLSHATVPPAPARAADSVLNGHRSKGLCDTAKKDDLPELA
          SPSNIKAQFRQSWPTKI.VPQD.ED.LTATPLSHATVPPAPARAA.SVLNGHRSKG.CD.AKKDDLPELA
Retrocopy SPSNIKAQFRQSWPTKINVPQDPEDHLTATPLSHATVPPAPARAANSVLNGHRSKGRCDMAKKDDLPELA

Parental  GPALSAVPPASLKPAASGRKCL
          G.ALS.VPPASLKP.ASGRKCL
Retrocopy GLALSTVPPASLKPVASGRKCL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1575 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001785	2 retrocopies	retro_mluc_1575 , retro_mluc_1957,
Sorex araneus	ENSSARG00000005479	1 retrocopy	retro_sara_263,