RetrogeneDB ID: retro_mluc_1602

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:3253745..3254717(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025562
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GABPB2
• Ensembl ID: ENSMLUG00000002973
• Aliases: None
• Description: None

Sequence

>retro_mluc_1602
ATGTCCCTGGTAGATTTGGGAAAGAAGCTTTTAGAAGCGGCACGAGCAGGTCAAGATGATGAAGTTCGTATTTTGGTGGC
AAATGGAGCTCCTTTTACTACAGACTGGCTGGGAACTTCTCCACTTCACCTGGCAGCACAGTACGGGCATTATTCCACCA
CAGAGGTACTACTTCGAGCTGGTGTAAGTAGGAATGCCAGAACCAAAGTGGACCGAACGCCCTTACATGTGGCAGCTTCT
GAGGGCCATGCCGGCATAGTAGAGGTTTTGCTTCAGCATGGTGCTGATGTCAATGCAAAGGACATGTTAAAGATGACAGC
TTTACATTGGGCCACAGAACACAACCATCAAGATGTGGTGGAGCTTTTAATCAAATATGGTGCTGATGTACACACGCAGA
GTAAGTTTTGTAAAACTGCATTTGATATTTCAGTAGACAATGGGAATAAAGATTTAGCAGAGATATTACAGATTGCTATG
CAGAATCAAATTAACACAAACCTAGAGAGTCCCGACACTGTGGCGATACATGCTGCAACACCACAGTTTATCATTGGACC
TGGAGGGGTGGTGAACCTAACAGGTCTGGCATCTTCAGAAAATTCATCCAAGGCAACAGATGAAACAGGTGTGTCCGCTG
TTCAGTTTGGAAACTCCTCTACATCAGTATTAGCTGCATTAGCTGCCTTAGCTGAAGCTTCTGCTCCCTTGTCCAATTCT
TCAGAAACTCCAGTAGTGGCTACGGAGGAAGTAGTTACTGCAGAATCAGTGGATGGTGCAATTCAGCAAGTAGTTAGTTC
AGGGGGTCAGCAAGTCATCACAATAGTAACAGATGGAATCCAGCTTGGAAATTTGCACTCCTTTCCAAACAGTGGAATAG
GCCAGCCCATCATTGTGATCATGCCAGATGGACAGCAAGTATTAACATTACCAGCAACGGACATTGCTGAAGAAACTGTT
ATAAGTGAAGAA

Alignment

ORF - retro_mluc_1602 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.55 %
• Parental protein coverage: 72.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRAGVSRDARTKV
          MSLVDLGK.LLEAAR.GQDDEVR.L.ANGAPFTTDWLGTSPLHLAAQYGHYST.EVLLRAGVSR.ARTKV
Retrocopy MSLVDLGKKLLEAARAGQDDEVRILVANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRAGVSRNARTKV

Parental  DRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATEYHHRDVVELLIKYGADVHAFSKFDKSA
          DRTPLH.AA..GHA.IVE.L...GADVNAKDMLKMTALHWATE..H.DVVELLIKYGADVH..SKF.K.A
Retrocopy DRTPLHVAASEGHAGIVEVLLQHGADVNAKDMLKMTALHWATEHNHQDVVELLIKYGADVHTQSKFCKTA

Parental  FDIALEKNNAEILVILQEAMQNQVNANPERANPVTV--ATP-FIFTAGEVVNLASLVSSANTKTTSEIGD
          FDI.....N.....ILQ.AMQNQ.N.N.E....V....ATP.FI...G.VVNL..L.SS.N....S...D
Retrocopy FDISVDNGNKDLAEILQIAMQNQINTNLESPDTVAIHAATPQFIIGPGGVVNLTGLASSENS---SKATD

Parental  PHASSTVHFSNSTTSVLATLAALAEASAPLSNSHRV-TANSEEIIEGNSVDSSIQQVVGSGGQRVITIVT
          ....S.V.F.NS.TS..........ASAPLSNS........EE.....SVD..IQQVV.SGGQ.VITIVT
Retrocopy ETGVSAVQFGNSSTSXXXXXXXXXXASAPLSNSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVT

Parental  DGVPLGNIQTAIPTGGIGQPFIVTVQDGQQVLTVPAGQVAEETIIEEE
          DG..LGN.....P..GIGQP.IV...DGQQVLT.PA...AEET.I.EE
Retrocopy DGIQLGNLH-SFPNSGIGQPIIVIMPDGQQVLTLPATDIAEETVISEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1602 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002973	1 retrocopy	retro_mluc_1602 ,