RetrogeneDB ID: retro_mluc_1744

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429899:1728359..1729614(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000011263
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KCTD20
• Ensembl ID: ENSMLUG00000007139
• Aliases: None
• Description: None

Sequence

>retro_mluc_1744
ATGAATGTTCATCGTGGCAGTGAGAGTGACAGGTTATTGCTGCAGGAGGCCAGCTGCCTAATGGATGAAACCTCGGCTGC
AGCCGAAGAAAAAGAAACTAGTAGCCTGACTTCTTCTGGTCTTCAAAATCTTGCTTATCCACTCACTCCCAGGAATGATG
ATGTTTCATTGGACTATGCCTCTCAGTCAGCAAGTCTCCAATTCCCTCACATAATGCCACTTCCTGAAGACAGCAAAAGC
TCTTGCTTCCCAAGTGGGAATAAACGGAGCTATGAACCTTTTATTGCTCCATAACGATTTGGAAACAGCACTATGGGCTT
TGGCAGTAACGTTCATTCCCATGCGCCAGAGAAAGTGACACTTCTTGTAGACGGCACACGTTTTGTAGTGAATCCACAAA
TTTTCACTGCTCACCCGGATACCATGTTGGGAAGGATGTTTGGACCAGGAAGAGAGTACAACTTCACACGGCCCAACGAG
AAGGGGGAGTATGAGATTGCCGAAGAAATCAGTGCAACTGTCTTTCGAATGGTGCTGGATTATTACAAAACTGGTATCAT
AAAGTGTCCTGATGGCATCTCTATCCCAGACCTTAGAGATACCTGTGATTATCTCTGCATTAACTTTGACTCAACACTAT
CCGATGTCAAGATCTGAGTGCTCTATTGCATGAACTGTCTAATGACGGTGCTCACAGCAGTTTGATCACTACCTCAAAGA
ACTGATCCTGCCCATCATGGTGGGCTGTGCCAAGAAAGGGGAGCGAGAGTGCCACATCGTTGTGCTGACCGATGAGGATT
CTGCGGACTGGGATGAAGACCACCCCCCACCCATGGGAGAGGAATATTTCCAAATTCTTTATAGTTTCAAGCTCTACAGA
TTCTTCAAGTATATTGAGAATTGGGATGTTGCTAAAACAGTGTTAAAGGAACAGGTCCAGGAAAACATTCACATTGGAAT
TGAAGGTTACCCTACCTGTAAAGAAAAAATTAAGAGAAGACCTGGTGGCCGATCTGAAGTCATCTATAATTATGTGCAGC
GCCCTTTTATCCAGATGTCATGGGAAAAGGAAGAAGGAAAGAGTCGCCATGTGGACTTCCAATGTGTTCGGAGCAAATCC
CTCACTAATCTGGTAGCTGCTGGAGAAGATGTCTTGGAGGACCAGGGGATATGGATGCATCACCCTCCCCAAGTGGATGA
ACTTGACCGACTAAATGCCCCACTTTCTCAGGTGGCTTCTAATGACTTTCAGGAT

Alignment

ORF - retro_mluc_1744 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.11 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNVHRGSESDRLLLQEASCLMDETSAAAQEKETSSLTSSGLQNLAYPLTPRSDDLSLDYASQPASLQFPH
          MNVHRGSESDRLLLQEASCLMDETSAAA.EKETSSLTSSGLQNLAYPLTPR.DD.SLDYASQ.ASLQFPH
Retrocopy MNVHRGSESDRLLLQEASCLMDETSAAAEEKETSSLTSSGLQNLAYPLTPRNDDVSLDYASQSASLQFPH

Parental  IMPLPEDSKGSCFPGGTKRSYEPFIAPERFGNSTMGFGSNVHSQAPEKVTLLVDGTRFVVNPQIFTAHPD
          IMPLPEDSK.SCFP.G.KRSYEPFIAP.RFGNSTMGFGSNVHS.APEKVTLLVDGTRFVVNPQIFTAHPD
Retrocopy IMPLPEDSKSSCFPSGNKRSYEPFIAP*RFGNSTMGFGSNVHSHAPEKVTLLVDGTRFVVNPQIFTAHPD

Parental  TMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFD
          TMLGRMFGPGREYNFTRPNEKGEYEIAE.ISATVFR.VLDYYKTGII.CPDGISIPDLRDTCDYLCINFD
Retrocopy TMLGRMFGPGREYNFTRPNEKGEYEIAEEISATVFRMVLDYYKTGIIKCPDGISIPDLRDTCDYLCINFD

Parental  -FNTIRCQDLSALLHELSNDGAH-KQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPP
          ..NTIRCQDLSALLHELSNDGAH..QFDHYL.ELILPIMVGCAKKGERECHIVVLTDEDS.DWDEDHPPP
Retrocopy <LNTIRCQDLSALLHELSNDGAH<QQFDHYLKELILPIMVGCAKKGERECHIVVLTDEDSADWDEDHPPP

Parental  MGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQR
          MGEEY.QILYS.KLYRFFKYIEN.DVAKTVLKE....NI.IGIEGYPTCKEKIKRRPGGRSEVIYNYVQR
Retrocopy MGEEYFQILYSFKLYRFFKYIENWDVAKTVLKEQVQENIHIGIEGYPTCKEKIKRRPGGRSEVIYNYVQR

Parental  PFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRLNAPLSQMASNDFQ
          PFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQ.I.MHHPPQVDELDRLNAPLSQ.ASNDFQ
Retrocopy PFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQGIWMHHPPQVDELDRLNAPLSQVASNDFQ

Parental  D
          D
Retrocopy D

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1744 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000017166	1 retrocopy	retro_ecab_55,
Myotis lucifugus	ENSMLUG00000007139	1 retrocopy	retro_mluc_1744 ,
Tarsius syrichta	ENSTSYG00000012406	1 retrocopy	retro_tsyr_2108,