RetrogeneDB ID: retro_mluc_1783

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429907:2314108..2315044(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PDXK
• Ensembl ID: ENSMLUG00000004931
• Aliases: None
• Description: None

Sequence

>retro_mluc_1783
CAGGCTGGCCTGGAGGAGGAATGCCGGGTGCTCTCCATCAACAGCCACGATGTCCGCGGCTACATGGGAAACCGGGTGGC
CACGTTCCTGCTGCAGGTTTTAGGATTTGAGATTGAAGCTGTGAACTCTGTCCAGTTTTCAAACCACACAGGCAACGCAC
ACTGAAAGGGTCAGGTGCTGAACGCAGAGGAGCTCCAGGAGGTGTACGAAGGCCTGAAGCTGAACAACGTGAATAAATAT
GACTACGTGCTCATGGGTACACGAGGGACAAGTCCTTCCTGGCCATGGTGGTGGGCATCGTGCGGGAGCTGAAGCAGCAG
AACTCCCAGCTGGCATACCTGTGCGACTGGTGATGGGTGACAAGTGGGATGGGGAAGGCTCCATGTACGTTCCAGAGGAC
CTCCTTTCTGTTTGCAAAGAAAAGGTTGTGCCGGTTACAGACATTGTACCTACAACCAGTTCGAGGCTGAGTACTGACTG
GCAGAAAGATCCACAGCCTGAAAGAAGCCTTAGCGGTGAGGGACGTGCTGCACTGGATGGGGACCGCCGTGGTCATCACC
AGCTCGGACCTCCCTTCCCGCAGGGCGGTGACTACCTGATTGTGCTGGGGAGCCAGAGGATCCGGCACCCTGATGGCTCC
GTGGCGATAGGGAGCATCTGCATGGACATTCGCAAGGTGGACGCCGTCTTTGTGGGCACTGGGGACTTGTTTGCTGCCAT
GCTCCTGGTGTGGACACACAGGCACCCCAATAATCTCAAGGTGGCCTGTGAGAAGACCGTGTCAGCCATGCACCACATTC
TGCAGCGGATCATCAAGTGTGAGAAAGCCCAGGCTGGAGAAGGGTGGAAGCCCAGCCCAGCCCAGCTGGAGCTGAGGATG
GTCCAGCAAAAGGGACATCAGAGAACCTGGAGATTGTCATCCAGGCAGCAGTGCTG

Alignment

ORF - retro_mluc_1783 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.62 %
• Parental protein coverage: 97.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  KAGMEEECRVLSIQSHVVRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNADELHEVYE
          .AG.EEECRVLSI.SH.VRGY.GNR.ATF.LQVLGFEI.AVNSVQFSNHTG.AH.KGQVLNA.EL.EVYE
Retrocopy QAGLEEECRVLSINSHDVRGYMGNRVATFLLQVLGFEIEAVNSVQFSNHTGNAH*KGQVLNAEELQEVYE

Parental  GLKLNNVNKYDYVLTG-YTRDKSFLAMVVDIVRELKQQNSRLVYVCD-PVMGDKWEGEGSMYVPEDLLPV
          GLKLNNVNKYDYVL.G.YTRDKSFLAMVV.IVRELKQQNS.L.Y.CD..VMGDKW.GEGSMYVPEDLL.V
Retrocopy GLKLNNVNKYDYVLMG<YTRDKSFLAMVVGIVRELKQQNSQLAYLCD<LVMGDKWDGEGSMYVPEDLLSV

Parental  YKEKVVPVADII-TPNQFEAE-LLTGRKIHSQEEALAVMDVLHSMGPDTVVITSSDLSS-PRGSDYLIVL
          .KEKVVPV.DI..T.NQFEAE..LTGRKIHS..EALAV.DVLH.MG...VVITSSDL.S.P.G.DYLIVL
Retrocopy CKEKVVPVTDIV<TYNQFEAE<VLTGRKIHSLKEALAVRDVLHWMGT-AVVITSSDLPS<PQGGDYLIVL

Parental  GSQRIRHPDGSVAIQRIRMDIHKVDAVFVGTGDLFAAMLLAWTHKHPNNLKVACEKTVSAMHHVLQRTIK
          GSQRIRHPDGSVAI..I.MDI.KVDAVFVGTGDLFAAMLL.WTH.HPNNLKVACEKTVSAMHH.LQR.IK
Retrocopy GSQRIRHPDGSVAIGSICMDIRKVDAVFVGTGDLFAAMLLVWTHRHPNNLKVACEKTVSAMHHILQRIIK

Parental  CAKAQAGEGQKPSPALLELRMVQ-SKRDIENPEIVVQATVL
          C.KAQAGEG.KPSPA.LELRMVQ..K...EN.EIV.QA.VL
Retrocopy CEKAQAGEGWKPSPAQLELRMVQ<AKGTSENLEIVIQAAVL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1783 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018186	1 retrocopy	retro_btau_1725,
Myotis lucifugus	ENSMLUG00000004931	1 retrocopy	retro_mluc_1783 ,
Tursiops truncatus	ENSTTRG00000011152	1 retrocopy	retro_ttru_1025,