RetrogeneDB ID: retro_mluc_1831

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429923:3043545..3044847(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KIF18B
• Ensembl ID: ENSMLUG00000012205
• Aliases: None
• Description: None

Sequence

>retro_mluc_1831
GTTGCCATGGCGATGGCAGTGGAGGACAGCGCGGTGCAGGTTGTGGTTCGGGTCCGACCGCCCACCCCACGGGAGCTAGA
GAGCCAGCGGAGGCCTGTGATTCGGGTGGTGGATGAGCGGGTGCTGGTGTTTGACCCTGAGGAGCCCGAGGGGGGCTTCC
TTGGCCTGAAATGGGGCAGCGTCCATGACGGCCCCAAGAAGAAGGGCAAAGACCTGACCTTCGTCTTTGACCGGGTCTTT
GGCGAGGCAGCCACCCAACAGGATGTCTTCCAGCACACCACCCGCAGCATCCTGGACAGCTTCCTCCAGGGCTACAACTG
CTCCGTGTTTGCCTATGGGGCCACAGGGGCCGGGAAGACACACACCATGCTGGGAAGAGAGGGGGACCCCGGCATCATGT
ACCTGACCACCATGGAACTGTACAGGCGGCTGGAGGCCCGCCAGGAGGAGAAGCGATTCGAGGTGCTCATCAGCTACCAG
GAGGTGTACAATGAGCAGATCCACGACCTTCTGGAGCCCAAGGGACCCCTTGTCATCCGTGAGGATCCCGACAAGGGGGT
GGTGGTATAAGGACTTTCCTTCCACCAGCCAACCTCAGCTGGGCAGCTGCTGGAGATGCTGACCAGGGGGAACCGTAACC
GCACACAGCACCCCACTGACGCCAACGCTGCTTCCTCTCGCTCCCATGCCATCTTCCAGATCTTCGTGAAGCAGCAGGAC
CGTGTTCCAGGTCTGACCCAGGCCCTTCAGGTGGCCAAGATGAGCCTGATTGACCTGGCTGGCTCCGAGCGGGCGTCCAA
CACCCACGCGAAGGGGGAGCGGCTGCGGGAAGGTGCCAACATCAACCGCTCCCTGCTGGCCCTCATCAATGTCCTCAATG
CCCTGGCCGATGCAAAGAGTCGAAAGTCTCATGTGCCCTACCGGGACAGCAAGCTGACCCGCCTGCTCAAGGACTCCATT
GGAGGCAACTGCCACACAGTGATGATTGCTGCCATCAGCCCCTCTAGCCTGACGTATGAGGACACGTACAACACCCTCAA
GTACGCCGACCGAGCCAAGGAGATCAAACTTTCGCTGAAAAGCAATGTGGTCAGCCTGGACAGTCACATCAGCCAGTACG
CCACAATCTGCCAGCAGCTCCAGGCTGAGGTGGCCAGTCTGAGGGAGAAGCTTCGCATGTATGAGGCAGGAGCCCAGGAC
CCACAACAGGACCTCCCACAGCCCCCCAAATCAGGCACTCCACAACCACCCCTTTCCAGCTCCTCCCCACCATCTCATCT
TCCCAGCCAGCCCGGCACCCCA

Alignment

ORF - retro_mluc_1831 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.71 %
• Parental protein coverage: 57.99 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VAMVMAVEDSAVQVVVRVRPPTPRELESQRRPVIQVVDERVLVFDPEEPDGGFLGLKWGSVHDGPKKKGK
          VAM.MAVEDSAVQVVVRVRPPTPRELESQRRPVI.VVDERVLVFDPEEP.GGFLGLKWGSVHDGPKKKGK
Retrocopy VAMAMAVEDSAVQVVVRVRPPTPRELESQRRPVIRVVDERVLVFDPEEPEGGFLGLKWGSVHDGPKKKGK

Parental  DLTFVFDRVFGEAATQQDVFQHTTHSILDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPGIMYLTTMEL
          DLTFVFDRVFGEAATQQDVFQHTT.SILDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPGIMYLTTMEL
Retrocopy DLTFVFDRVFGEAATQQDVFQHTTRSILDSFLQGYNCSVFAYGATGAGKTHTMLGREGDPGIMYLTTMEL

Parental  YRRLEARQEEKQFEVLISYQEVYNEQIHDLLEPKGPLAIREDPDKGVVVQGLSFHQPTSAEQLLEMLTRG
          YRRLEARQEEK.FEVLISYQEVYNEQIHDLLEPKGPL.IREDPDKGVVV.GLSFHQPTSA.QLLEMLTRG
Retrocopy YRRLEARQEEKRFEVLISYQEVYNEQIHDLLEPKGPLVIREDPDKGVVV*GLSFHQPTSAGQLLEMLTRG

Parental  NRNRTQHPTDANATSSRSHAIFQIFVKQQDRVPGLTQALQVAKMSLIDLAGSERASSTHAKGERLREGAN
          NRNRTQHPTDANA.SSRSHAIFQIFVKQQDRVPGLTQALQVAKMSLIDLAGSERAS.THAKGERLREGAN
Retrocopy NRNRTQHPTDANAASSRSHAIFQIFVKQQDRVPGLTQALQVAKMSLIDLAGSERASNTHAKGERLREGAN

Parental  INRSLLALINVLNALADAKGRKSHVPYRDSKLTRLLKDSIGGNCRTVMIAAISPSSLTYEDTYNTLKYAD
          INRSLLALINVLNALADAK.RKSHVPYRDSKLTRLLKDSIGGNC.TVMIAAISPSSLTYEDTYNTLKYAD
Retrocopy INRSLLALINVLNALADAKSRKSHVPYRDSKLTRLLKDSIGGNCHTVMIAAISPSSLTYEDTYNTLKYAD

Parental  RAKEIKLSLKSNVVSLDCHISQYATICQQLQAEVASLREKLRMYEAGAQAPQQDL--PPFQLLPTISSSQ
          RAKEIKLSLKSNVVSLD.HISQYATICQQLQAEVASLREKLRMYEAGAQ.PQQDL..PP....P....S.
Retrocopy RAKEIKLSLKSNVVSLDSHISQYATICQQLQAEVASLREKLRMYEAGAQDPQQDLPQPPKSGTPQPPLSS

Parental  PAPHPRAPPRVCSP
          ..P....P.....P
Retrocopy SSPPSHLPSQPGTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1831 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012205	1 retrocopy	retro_mluc_1831 ,