RetrogeneDB ID: retro_mluc_1854

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429930:2483045..2483894(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CENPT
• Ensembl ID: ENSMLUG00000010268
• Aliases: None
• Description: None

Sequence

>retro_mluc_1854
AGCAGTGGGCCTGGGCTGTAGAATGACAGTCCTGAGAAACCAGCCCAGCTTCTGGCAGGAAAGGCAGAGGAGGTTGATGC
CTTTGCTCTGGGCTTCCCAAACACCAGCAATAGTATCTCTAGAGAAGATGAACTAGAGCCCTTCCAGGATGGAGCTGGTG
AGGAGGCAGAGGAAACAATGAGAGAAAGCATGAGCATGAGTGAAGGGAAGGGGGCAGCAGGAACACAAGCATCCGCCAGA
GCAGAAGAGCCCGAGACACACACAGAAGTGAGAGAAGCAGAAGGATCCTGGGGGCTACTGAGGCCAAGGCGCCAGAAGGA
TCTTCAGAGGATAAGGACACTGCAGGTAGAACATCAAGTCCAGAGTTGGCCTCCTGCATCTCGGAGTTTCTTCAGGCCAG
ACAACTTGAGTTCCTTGAGCCAGCCCCACCGACTAGCATTACACTCTTATCTTCAGAGCTCCTGGAGCCTCTATTGGCCA
GGCTTCCCCCTCCCCCGGCCCAAATTGCTGGCCCCAGACTCCATCAAGATCCCTACAAGACAGGACTAAGCACCATGCTA
AGCTCTTCAGCTTCTATGCTAAAATGGCCATGGAGACGAAGGCTCTTGAGATGGTGGAGAAGTGCCTGGACTAGTATTTC
CAGCATCTTTGCAATGACCTAGATGCATTTGCTGCTCATGCTGGCAGCAAGACTGTGAGGTCAAGGACCTGGACCTGCTG
ATGCGAAGGCAGGGCCTGGGCACGGACCGAGTCTCCCTGCACATGCTTGTGGAGCAGCACCTGCCCCTGGAGTACCAGCA
GCTCCTCATTCCTTGTATGTTCAGTGACAACACTGTCTTCCCTGGCCAG

Alignment

ORF - retro_mluc_1854 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.31 %
• Parental protein coverage: 50.09 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SSGPGLQNNSPGKPAQFLAGKAEEVDALAMGFPNTSSSTSGEDGLEPLLGGVGEEVEERMEESMSLSEVK
          SSGPGL.N.SP.KPAQ.LAGKAEEVDA.A.GFPNTS.S.S.ED.LEP...G.GEE.EE.M.ESMS.SE.K
Retrocopy SSGPGL*NDSPEKPAQLLAGKAEEVDAFALGFPNTSNSISREDELEPFQDGAGEEAEETMRESMSMSEGK

Parental  EAAGAQASARAEEPEAHTEVAEAEGSW-GAIEEKEPEGSSGDKDTEGRTARPELASSTPEFPRARQLEFL
          .AAG.QASARAEEPE.HTEV.EAEGSW.GA.E.K.PEGSS.DKDT.GRT..PELAS...EF..ARQLEFL
Retrocopy GAAGTQASARAEEPETHTEVREAEGSW<GATEAKAPEGSSEDKDTAGRTSSPELASCISEFLQARQLEFL

Parental  EPAPPTSTAVLSSEPLEPLSARL-PTRVQTAGPRRRQDPYKMGLS-HYAKLFSFYAKMPMEKKALEMVEK
          EPAPPTS...LSSE.LEPL.ARL.P...Q.AGPR..QDPYK.GLS.H.AKLFSFYAKM.ME.KALEMVEK
Retrocopy EPAPPTSITLLSSELLEPLLARLPPPPAQIAGPRLHQDPYKTGLS<HHAKLFSFYAKMAMETKALEMVEK

Parental  CLDKYFQRLCDDLDVFAAHAGRKTVR-LEDLELLMRRQGLVTDRVSLHVLVEQHLPLEYRQLLIPCAFSG
          CLD.YFQ.LC.DLD.FAAHAG.KTVR...DL.LLMRRQGL.TDRVSLH.LVEQHLPLEY.QLLIPC.FS.
Retrocopy CLD*YFQHLCNDLDAFAAHAGSKTVR<VKDLDLLMRRQGLGTDRVSLHMLVEQHLPLEYQQLLIPCMFSD

Parental  NTVFPAQ
          NTVFP.Q
Retrocopy NTVFPGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1854 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000016760	1 retrocopy	retro_dnov_376,
Myotis lucifugus	ENSMLUG00000010268	1 retrocopy	retro_mluc_1854 ,