RetrogeneDB ID: retro_mluc_1935

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429957:704212..704539(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CPSF4L
• Ensembl ID: ENSMLUG00000009617
• Aliases: None
• Description: None

Sequence

>retro_mluc_1935
ATGCAGGAAATCATCGCCAGCGTGGACCACATCAAGTTCGACTTGGAGATCTCGGTGGAGCAGCAGCTCGGGGCACAGCC
GCTGCCCTTCCCCGGCATGGACAAGGCCCTGGCTGCTGTCTGTGAATTCTTTTTGAAAGCTGCCCGTGGCAAAGGGGGCA
TGTGCCCGTTTCGCCACATTAGTGGTGAGAAGACAGTGGTGTGCTAACACTGGCTACGCTGGCTGTGCAAGAAGGAGGAC
CAGTGCAAGTTCCTCCATGAGTAGGACATGACCAAGATGCCCGAGTGCTACTTCTACTCAGAGTTCGGTCCCCTGTGTAG
GAACCGG

Alignment

ORF - retro_mluc_1935 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.72 %
• Parental protein coverage: 60.34 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEEVIAGLERFTFTLEKDVEMQKGIEPLPFQGMDKSSSAVCNFYAKGLCEKGRLCPFRHDHGEKTVVCKH
          M.E.IA......F.LE..VE.Q.G..PLPF.GMDK...AVC.F..K....KG..CPFRH..GEKTVVC.H
Retrocopy MQEIIASVDHIKFDLEISVEQQLGAQPLPFPGMDKALAAVCEFFLKAARGKGGMCPFRHISGEKTVVC*H

Parental  WLRGLCKKGDQCRFLHQYDLSRMPECYFFSKFGE-CSNK
          WLR.LCKK.DQC.FLH..D...MPECYF.S.FG..C.N.
Retrocopy WLRWLCKKEDQCKFLHE*DMTKMPECYFYSEFGPLCRNR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1935 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019911	1 retrocopy	retro_cjac_2207,
Myotis lucifugus	ENSMLUG00000009617	2 retrocopies	retro_mluc_1935 , retro_mluc_1936,
Monodelphis domestica	ENSMODG00000025672	1 retrocopy	retro_mdom_558,