RetrogeneDB ID: retro_mluc_195

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429891:2008994..2010251(+)
• Located in intron of: ENSMLUG00000004101

Retrocopy information

• Ensembl ID: ENSMLUG00000024625
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FAM126A
• Ensembl ID: ENSMLUG00000000870
• Aliases: None
• Description: None

Sequence

>retro_mluc_195
ATGTTCACTTCAGAGAAAGGGGTTGTGGAGGAATGGTTGTCAGAGTTTAAGACACGACCAGAAGCATCTTTACCAAATTA
TGCCACAAATTTGAAAGATAAGAGTTCTTTAGTTTCATCTCTTTATAAAGTTATCCAGGAGCCACAAAGTGAGTTGCTAG
AACCTGTCTGTCACCAGCTCTTTGAATTCTATCGCAGTGGAGAGGAGCAGTTACTTCGATTTACACTGCCGTTTCTTCCA
GAACTGATTTGGTGCTACCTTGCCGTCTCAGCCAGCAGAAATGTGCACAGCAGAGGATGCATTGAAGCTCTTTTTCTAGG
GGTTTACAATTTGGAAATAGTTGACAAACAGGGACATAGCAAAGTATTGAGTTTTACGATTCCATCTTTATCCAAGCCAT
CTGTATATCATGAACCTTCCAGCATTGGGTCCATGGCTCTGACTGAGAGTGCACTATCCCAGCATGGTTTGTCAAAAGTT
GTATACAGTGGACCTCACCCCCAAAGGGAGATGCTGACAGCCCAGAACAGGTTTGAAGTGTTGACATTCCTTTTGTTGTG
TTACAATGCTGCCTTAACCTATATGCCCAGTGTTTCTCTTCAATCATTGTGTCAGATTTGTTCAAGAATCTGTGTTTGTG
GATATCCCAGACATGTAAGAAAATACAAAGGTGTAAGTAGCAGGATAACAGTTTCTTCAGAATTCATGGTGCAGATGTTA
ACAGGGATTTATTTTGCTTTTTATAATGGAGAATGGGATCTAGCTGAAAAAGCATTGGATGATATTATTTACAGAGCCCA
GTTAGAATTATATCCAGAGCCATTGCTGGTTGCTAATGCAATAAAGGCTTCGTTGCCTCATGGTGCCATGAAATCTAGTA
AGGAGGGTACAAGGTGTATTCAAGTTGAAATCACACCAACTTCCTCTAGAATATCAAGAAATGCAGTAACCAGCATGTCA
ATAAGCGGTCACCGGTGGAAAAGACATGAGCAACCTGACGGCAATAATGATGATACTGAATTGGGCATCCTCGTCATTCC
TGAGATTAGTGTCACAAATGTGGCCGGAGAGAGAACCGGGAATGGGGAAAAAGGCAGAACACTAGGAGAGATTGATGCTC
AGCATATACAGGGTGTGCAGGAAACAGCCACAGATCCTAGAACTGAAAGCAAAGGCTTGCCAGAGATCAGGAGGCAAAAA
TCTGTAAGAAAACTGATGGAGGATGGAATAAACTCACCTGGCAGAGTGCAGTTTTAG

Alignment

ORF - retro_mluc_195 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.08 %
• Parental protein coverage: 69.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFTSEKGVVEEWLSEFKTLPEASLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQLFEFYRSGEEQ
          MFTSEKGVVEEWLSEFKT.PEASLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQLFEFYRSGEEQ
Retrocopy MFTSEKGVVEEWLSEFKTRPEASLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQLFEFYRSGEEQ

Parental  LLRFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHSKVLSFTIPSLSKPSVYHEPS
          LLRFTL.FLPELIWCYLAVSASRNVHS.GCIEAL.LGVYNLEIVDKQGHSKVLSFTIPSLSKPSVYHEPS
Retrocopy LLRFTLPFLPELIWCYLAVSASRNVHSRGCIEALFLGVYNLEIVDKQGHSKVLSFTIPSLSKPSVYHEPS

Parental  SIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEVLTFLLLCYNAALTYMPSVSLQSLCQICSRI
          SIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEVLTFLLLCYNAALTYMPSVSLQSLCQICSRI
Retrocopy SIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEVLTFLLLCYNAALTYMPSVSLQSLCQICSRI

Parental  CVCGYPRQHVRKYKGVSSRIPVSSEFMVQMLTGIYFAFYNGEWDLAEKALDDIIYRAQLELYPEPLLVAN
          CVCGYPR.HVRKYKGVSSRI.VSSEFMVQMLTGIYFAFYNGEWDLAEKALDDIIYRAQLELYPEPLLVAN
Retrocopy CVCGYPR-HVRKYKGVSSRITVSSEFMVQMLTGIYFAFYNGEWDLAEKALDDIIYRAQLELYPEPLLVAN

Parental  AIKASLPHGAMKSSKEGTRCIQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTDQEELMDISEVDEG
          AIKASLPHGAMKSSKEGTRCIQVEITPTSSRISRNAVTSMSI.GHRWKRH.............I....E.
Retrocopy AIKASLPHGAMKSSKEGTRCIQVEITPTSSRISRNAVTSMSISGHRWKRHEQPDGNNDDTELGILVIPEI

Parental  FYSRAASSTSQSG
          .....A......G
Retrocopy SVTNVAGERTGNG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_195 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000870	1 retrocopy	retro_mluc_195 ,