RetrogeneDB ID: retro_mluc_1953

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429961:1678944..1679155(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PMP2
• Ensembl ID: ENSMLUG00000009529
• Aliases: None
• Description: None

Sequence

>retro_mluc_1953
GAGATCCCCTTCAAGCTGAGGAAGGAGTTTAATGAAACCAAAGCAGACAACCAGAAAGTGAAGAGCATCATAACATTAGA
CAGTGGCTCATTGGTCCATGTCCCAAAACCGGCTTCGCAAAGAGACAACAATCAAAAGACAAACTCTCGATGGAAAAATG
GTAGTGAAACATACCATGGATACTATTGTCAGCACGCGAATCTACCAAAAG

Alignment

ORF - retro_mluc_1953 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.15 %
• Parental protein coverage: 52.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EISFKLGQEFEETTADNRKTKSVVTLVRGSLNQV-QKWDGKETTIKRKLVDGKMVVECKMKGVVCTRIYE
          EI.FKL..EF.ET.ADN.K.KS..TL..GSL..V.Q....KETTIKR...DGKMVV...M...V.TRIY.
Retrocopy EIPFKLRKEFNETKADNQKVKSIITLDSGSLVHV>QNRLRKETTIKRQTLDGKMVVKHTMDTIVSTRIYQ

Parental  K
          K
Retrocopy K

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1953 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Latimeria chalumnae	ENSLACG00000008511	3 retrocopies	retro_lcha_37, retro_lcha_45, retro_lcha_57,
Myotis lucifugus	ENSMLUG00000009514	3 retrocopies	retro_mluc_1590, retro_mluc_1920, retro_mluc_501,
Myotis lucifugus	ENSMLUG00000009529	1 retrocopy	retro_mluc_1953 ,
Myotis lucifugus	ENSMLUG00000013609	2 retrocopies	retro_mluc_1144, retro_mluc_1717,
Otolemur garnettii	ENSOGAG00000012166	1 retrocopy	retro_ogar_843,
Oryzias latipes	ENSORLG00000008282	1 retrocopy	retro_olat_7,