RetrogeneDB ID: retro_mluc_196

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430045:1543009..1545457(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024167
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015434
• Aliases: None
• Description: None

Sequence

>retro_mluc_196
ATGTCCTTCTCCCCTCATTTGAATCGTCCTCCCATGGGAATCCCAGCACTCCCACCAGGGATTCCACCACCACAGTTTCC
TGGCTTTCCTCCACCTGTACCTCCAGGAACCCCAATGATTCCTGTACCAATGAGCATTATGGCTCCTGCTCCAACTGTCC
GAGTACCCACTGTGTCCATGGTTGGAAAGCATTTGGGAGCAAGAAAGGATCATCCAGGCTTAAAGGCAAAGGAAAATGAT
GAAAATTATGGTCCTACTACTGTTTTTCTTGGCAACATTTCTGAGAAAGCCTCAGACATGCTCCTAAGACAGCTCCTTGC
TAAATGTGGCTTGGTTTTAAGCTGGAAGAGAGTACAAGGTGCATCTGGAAAACTTCAAGCCTTTGGATTCTGTGAGTATA
AGGAGCCTGAATCTACCCTCCGTGCAGTCAGGTTATTGCATGACCTGCAGATTGGAGAGAAGAAACTGCTTGTTAAAGTT
GATGCAAAGACAAAGGCACAACTGGATGAATGGAAAGCAAAGAAGAAAGCTTCTAATGGGACTGCGAGGCCAGAAACTGT
CCCTAATGATGACGAAGAAGCCTTAGATGAAGAAACCAAGAGAATAGATCAGATGATCAAAGGGGCCATTGAAATTTTAA
TATGTGAATACTCCAGTGAGCTCAATGCCCCTTCACAAGAATCTGACTCTCACCCCAGGAAGAAGGAGGACATTTTCCGC
AGATTTCCAGTGGCACCTCTGAACCCGTATCCACACATCACTAAGGAAGATATAAATGCTATAGAAATGGAAGAAGACAA
AAGAGACCTGATATCCCGAGAGATCAGCAAATTCAGAGATACACACAAAAAACTGGAAGAAGAGAAAGGCAAAAAAGAAA
AAGAAAGACAGGAAATTGAGAAAGAACGGAGAGAAAGAGAGAGGGAGCGTGAAAGGGAACGAGAAAGACGAGAACGAGAA
CGGGAAAGAGAACGTGAACGAGAAAAAGAGAAGGAACGGGAGCGGGAACGAGAACGGGATAGGGATCGTGACCGGACAAA
GGAGAGAGATCGTGACCGTGATCGGGAAAGGAGTTCAGATCGGAATAAGGATCAGAGTCGATCAAGAGAAAAGAGCAGAG
ATCGTGAAAGGGAGCGGGAGCGGAAAAGAGAGAGAGAGAGAGAACGTGAACGAGAAAGAGAGCGTGAAAGGGAACGGGAG
CGAGAAAGAGAAAAATACAAGAAGAGGGATCGAGAAGAGTATGAACGAAGAAAACTTGAAAGAAAACTCTGGGAGAAAGA
AGCTGCTTATCAAAAGCGCGTTAAGAATTGGGAAATCAGAGAACGGAAGAAAAGCCGGGAGTATGAGAAAGAGGCTGAAA
GAGAAGAGGAAAGGAGAAGAGAAATGGCAAAAGAAGCTAAACTACTAAAAGAATTCTTAGAAGATTATGATGATGATAGA
GATGATCCCAAATATTACAGAGGAAGTGCCCTTCAGAAAAGACTGCGTGACAGGGAAAAGGAAATGGAAGCAGATGAATG
GGATAGGAAAAGAGAGAAGGAAGAACTAGAGGAAACCAGGCAGCAACTTCTGGCAGAAGGGCATCCGGATCCAGATGCAG
GGCTTCAGAGGATGGAACAAGAGGCTGAGAGGCACAGACAACCACAAATAAAGCAAGAACCAGAATCAGAAGAAGAGGAA
GAAGAAACGCAAGAAAAAGAAGAAAAACGAGAGGAACCTGTGGAAGAAGAAGAAGAGCCAGAGCAGAAGCCCTGTCTTAA
ACCAACTCTGAGGCCCATCGGTTCTGCCCCATCTGTTTCCTCTGTCAGTGGCAACGCAACCCCCAGCACTCCTGGGGATG
AGTCTCCCTGTGGTTTTATTCCTCAAGAAAATTCGCCAGGTCAACAACAACCTGAGGAGCACAGGCCAAAAATAGGACTG
AGACTTAAACTGGGTGCTTCCAATAGTCCTGGTCAACCTAACTCTGTGAAGAGAAAGGAACTCCCTGTAGATAGTGTCTT
TAACAAATCTGAGGATGAAGACAGTGGTGATGTACCCAGAAAAAGGAAACTGGTTCCCTTGGATTATGGTGAAGATGGTA
AAAATGCTGCCAAAGGCACCGTAAACACTGAAGAAAAGCGCAAACACATGAAGAGTCTCATTGAGAAAATTCCTACAGCC
AAACCTGCGCTTTTTGCCTATCCCCTGGATTGGTCTATTGTGGACTCTCTATTGATGGAAAGACGAATTAGACCTTGGAT
TAATAAGAAAATTATAGAATACATAGGTGAAGAAGAAGCTACATTCGTTGATTTTGTTTGTTCTAAGGTTATGGCTCACA
GTTCACCTCAGAGCATTTTAGATGATGTTGCCATGGTACTTGATGAAGAAGCAGAAGTTTTTATAGTCAAACTGTGGAGA
TTATTGATATATGAAACAGAAGCCAAGAAAATTGGTCTTGTGAAGTAA

Alignment

ORF - retro_mluc_196 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.35 %
• Parental protein coverage: 66.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DTHKKLEEEKGKKEKERQEIEKERRERERERER-ERERRERERERERERER-EKEKERERERERDRDRDR
          D.......E..K........E.E....E.ER...E.ERRERERERERERER.E.E.ERERERE....R.R
Retrocopy DKRDLISREISKFRDTHKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREKEKERER

Parental  TKERDRDRDR--ERDRDRDRERSSDRNKDRSRSRNEGAKMSKGRKRKRESRRREERKEREREKDKKRDRE
          ..ERDRDRDR..ERDRDRDRERSSDRNKD.SRSR.........R.RKRE.R.RE...ERERE....R.RE
Retrocopy ERERDRDRDRTKERDRDRDRERSSDRNKDQSRSREKSRDRERERERKRE-RERERERERERERERERERE

Parental  E---DEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMVKNNKSVIEYIE
          .........YERRKLERKL.EKEAAYQ.R.KNWEIRERKK.REYEKEAEREEERRREM.K..K...E..E
Retrocopy KYKKRDREEYERRKLERKLWEKEAAYQKRVKNWEIRERKKSREYEKEAEREEERRREMAKEAKLLKEFLE

Parental  RYTPMWDTSIHKRGSALQKRLRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAELQRMEQEAER
          .Y....D.....RGSALQKRLRDREKEMEADE.DRKREKEELEE.RQ.LLAEGHPDPDA.LQRMEQEAER
Retrocopy DYDDDRDDPKYYRGSALQKRLRDREKEMEADEWDRKREKEELEETRQQLLAEGHPDPDAGLQRMEQEAER

Parental  RRQPQIKQEPESEEEEEEKQEKEEKREEPVEEEEEPEQKPCLKPTLRPISSAPSVSSASGNATPNTPGDE
          .RQPQIKQEPESEEEEEE.QEKEEKREEPVEEEEEPEQKPCLKPTLRPI.SAPSVSS.SGNATP.TPGDE
Retrocopy HRQPQIKQEPESEEEEEETQEKEEKREEPVEEEEEPEQKPCLKPTLRPIGSAPSVSSVSGNATPSTPGDE

Parental  SPCGIIIPHENSPDQQQPEEHRPKIGLSLKLGASNSPGQPNSVKRKKLPVDSVFNKFEDEDSDDVPRKRK
          SPCG..IP.ENSP.QQQPEEHRPKIGL.LKLGASNSPGQPNSVKRK.LPVDSVFNK.EDEDS.DVPRKRK
Retrocopy SPCG-FIPQENSPGQQQPEEHRPKIGLRLKLGASNSPGQPNSVKRKELPVDSVFNKSEDEDSGDVPRKRK

Parental  LVPLDYGEDDKNAAKGTVNTEEKRKHIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIE
          LVPLDYGED.KNAAKGTVNTEEKRKH.KSLIEKIPTAKP.LFAYPLDWSIVDS.LMERRIRPWINKKIIE
Retrocopy LVPLDYGEDGKNAAKGTVNTEEKRKHMKSLIEKIPTAKPALFAYPLDWSIVDSLLMERRIRPWINKKIIE

Parental  YIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLVK
          YIGEEEAT.VDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVK.WRLLIYETEAKKIGLVK
Retrocopy YIGEEEATFVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKLWRLLIYETEAKKIGLVK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_196 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000015434	1 retrocopy	retro_mluc_196 ,
Rattus norvegicus	ENSRNOG00000002874	1 retrocopy	retro_rnor_669,