RetrogeneDB ID: retro_mluc_199

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431079:26481..26862(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029612
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000014315
• Aliases: None
• Description: None

Sequence

>retro_mluc_199
ATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGAGGATATGGAGGAGGATGAAGAACTCGATGACTTGGAGAA
TGCTGAGGAAGAGGGCCAGGAGAACCTTGAGATCCTCCCCTCTGGACAGCGACCGCAGGCCAACCAGAGGCGGATCACCA
CACCATATATGACCAAGTATGAGCGAGCCCGCGTGCTGGGCACCCGAGCCCTCCAGATCTCGATGTGTGCCCCCGTGATG
GTGGAACTGAACGGGGAGACAGATCCCCTGGTTATCGCCATGAAAGAGCTCAAGGCCCGAAAGATCCCCATCATCATTCG
GCGCTACCTGCCTGACGGGAGCTATGAAGACTGGGGGGTTGATGAGCTCATCACGGACTAA

Alignment

ORF - retro_mluc_199 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.48 %
• Parental protein coverage: 97.67 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRA
          MSDNEDNFDGDDF.D.EEDE.LDDLENAEEEGQEN.EILPSG.RPQANQ.RITTPYMTKYERARVLGTRA
Retrocopy MSDNEDNFDGDDFEDMEEDEELDDLENAEEEGQENLEILPSGQRPQANQRRITTPYMTKYERARVLGTRA

Parental  LQIAMCAPVMVELEGETDPLLIAMKELNHRARKIPIIIRRYLPDGSYEDWGVDELI
          LQI.MCAPVMVEL.GETDPL.IAMKEL...ARKIPIIIRRYLPDGSYEDWGVDELI
Retrocopy LQISMCAPVMVELNGETDPLVIAMKEL--KARKIPIIIRRYLPDGSYEDWGVDELI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_199 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010331	1 retrocopy	retro_amel_716,
Bos taurus	ENSBTAG00000004820	1 retrocopy	retro_btau_1648,
Canis familiaris	ENSCAFG00000001437	1 retrocopy	retro_cfam_596,
Myotis lucifugus	ENSMLUG00000014315	1 retrocopy	retro_mluc_199 ,
Monodelphis domestica	ENSMODG00000019063	2 retrocopies	retro_mdom_1276, retro_mdom_2015,
Mustela putorius furo	ENSMPUG00000012997	1 retrocopy	retro_mputfur_1158,
Otolemur garnettii	ENSOGAG00000025463	1 retrocopy	retro_ogar_1639,