RetrogeneDB ID: retro_mluc_1992

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429979:2222222..2222660(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLRG2
• Ensembl ID: ENSMLUG00000014768
• Aliases: None
• Description: None

Sequence

>retro_mluc_1992
CGCTGGGCCCTGGTGGTCATGGCCGTGCTCCTGGCAGTGTCCACGGTCGCCATTGTGGCCCTGGCCTCTAAAACAGGAGC
GGGGTGCCGGCCGTGTCCCCATGGCTGGCTGTGGTCTGGGGAGCACTGTTACTGCCTCTCTACTGAAGCTCAAGCCTGGG
AGGCCAGCCAGGCTTTCTGCGCCGCCCACCGTACTACCCTCCCCCTGCTGAGCCACACCCAGGACTTCCTGGGCAGATAC
CCTGTCACCAAGTACTCCTGGGTGGGGGCCAGGTGAGGCCCCCAGGGCTGGCACTGGATCAGTGGGGCCCCCTGTCACCC
CAGCTACCCCAGAGGAAGACAAGGACCAACCGGGTCTGAAGTGCTCGGCCTGGAGAGAGGCAAGCTCGTGGCTTTGGACT
GCGCTTCTTCAAGACCCTGGGTCTGTGCCCAGGGGACC

Alignment

ORF - retro_mluc_1992 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.93 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  RWALAVMAVLLAVSMVAIVALASKTGAVCRPCPHGWLWSGEHCYYLSTEAQAWEASQAFCSAHHATLPLL
          RWAL.VMAVLLAVS.VAIVALASKTGA.CRPCPHGWLWSGEHCY.LSTEAQAWEASQAFC.AH..TLPLL
Retrocopy RWALVVMAVLLAVSTVAIVALASKTGAGCRPCPHGWLWSGEHCYCLSTEAQAWEASQAFCAAHRTTLPLL

Parental  SHTQPMEDFLGRYPVTKYSWVGARRGPQGWHWIDG-GPLPPQL-VPEEDKDQPGLKCA-GLEGGKLMALD
          SHTQ...DFLGRYPVTKYSWVGAR.GPQGWHWI.G.GPL.PQL..PEEDKDQPGLKC..GLE.GKL.ALD
Retrocopy SHTQ---DFLGRYPVTKYSWVGAR*GPQGWHWISG<GPLSPQL<TPEEDKDQPGLKCS<GLERGKLVALD

Parental  CASSRPWVCAQGT
          CASSRPWVCAQGT
Retrocopy CASSRPWVCAQGT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1992 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000014768	1 retrocopy	retro_mluc_1992 ,