RetrogeneDB ID:

retro_mluc_2094

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL430027:836162..838999(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000023734
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:CTR9
Ensembl ID:ENSMLUG00000006212
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_2094
ATGTCGCGGGGCTCCATCGAGATTCCCCTCCGGGACACTGACGAGGTCATTGAACTTGACTTCGATCAGTTACCGGAGGG
AGATGAAGTTATCAGTATTTTGAAGCAGGAACACACACAACTGCACATATGGATTGCTTTGGCGCTGGAATACTACAAGC
AAGGAAAAACAGAAGAGTTTGTAAAGTTGTTGGAAGCAGCACGTATAGATGGCAATTTGGACTATAGAGACCATGAAAAA
GACCAGATGACTTGCTTGGATACATTGGCAGCCTACTATGTACAACAGGCTCGAAAGGAAAAGAATAAGGACAATAAGAA
AGATCTTATTACACAGGCAACCCTGTTGTATACAATGGCTGATAAAATTATTATGTATGATCAGAACCATTTATTGGGAA
GAGCCTGCTTCTGCCTGCTTGAAGGTGACAAAATGGATCAGGCTGATGCACAGTTTCATTTTGTACTCAACCAGTCTCCA
AATAATATTCCAGCCCTCCTTGGTAAAGCTTGCATTTCCTTTAACAAGAAGGATTACAGGGGAGCTCTTGCTTACTATAA
GAAAGCATTGCGTACTAACCCAGGATGTCCAGCGGAAGTTCGTTTAGGAATGGGCCATTGCTTTGTGAAACTTAACAAAC
TGGAGAAAGCTCGTCTCGCATTCAGCAGAGCCCTGGAACTTAATTCCAAATGTGTGGGAGCATTGGTTGGACTGGCTGTT
CTAGAGCTCAACAATGAAGAGGCTGATTCCATCAAAAATGGTGTCCAGCTTCTTTCCAGAGCTTATACCATCGATCCTAG
CAACCCTATGGTATTGAACCACTTGGCAAATCACTTTTTCTTCAAAAAGGATTACAGTAAAGTCCAGCACTTGGTCCTCC
ATGCATTCCATAACACAGAAGTGGAGGCTATGCAAGCAGAAAGTTTCTACCAGCTGGCTAGATCATTCCATGTTCAGGAA
GATTATGACCAAGCTTTCCAGTACTACTATCAAGCCACACAGTTTGCCTCATCCTCTTTTGTGCTGCCGTTTTTTGGTTT
GGGACAAATGTATATTTATCGAGGTGACAAAGAAAATGCATCTCAGTGCTTTGAGAAAGTTTTGAAAGCTTATCCTAATA
ATTACGAAACTATGAAAATTCTTGGCTCTCTGTATGCTGCCTCAGAAGATCAAGAAAAACGAGACATTGCCAAGGGCCAT
TTGAAGAAGGTCACAGAGCAGTATCCTGATGATGTTGAAGCTTGGATTGAACTGGCACAAATCTTAGAACAGACTGATAT
CCAGGGTGCCCTCTCAGCCTATGGAACAGCAACACGGATCCTTCAGGAAAAAGTACAGGCCGATGTCCCCCCAGAGATTC
TAAATAATGTGGTGCCCTCCATTTTAGACTTGGAAATCTAGGGGAGGCAAAGAAATATTTTTTGGCATCACTGGATCGGG
CAAAGGCTGAAGCTGAGCATGATGAACATTATTATAATGCCATTTCTGTCACAACATCCTACAATTTAGCTAGGCTGTAT
GAGGCGATGTGTGAATTCCATGACGCAGAAAAACTATATAAGAACATCTTACGGGAACATCCTAACTATGTTGATTGCTA
TCTGCGCCTGGGAGCCATGGCTCGAGACAAAGGAAACTTTTATGAGGCTTCAGATTGGTTTAAGGAAGCGCTTCAGATTA
ATCAGGACCATCCAGATGCTTGGTCTTTGATTGGTAATCTTCATTTGGCGAAACAAGAATGGGGTCCAGGCCAGAAGAAA
TTTGAGAGGATATTAAAACAACCGTCTACACAGAGTGACACGTACTCTATGCTGGCCCTGGGCAACGTCTGGCTCCAAAC
TTTGCATCAGCCCACCCAAGATAGAGAAAAAGAAAAGCGGCATCAAGATCGTGCTCTGGCCATCTACAAGCAAGTACTCA
GAAATGAGGCAACGAATCTGTATGCGGCTAATGGAATAGGAGCTGTTCTGGCCCACAAAGGATATTTCCGTGAAGCTCGT
GATGTATTTGCCCAAGTAAGAGAAGCAACAGCAGATATCAGTGATGTGTGGCTGAACCTAGCACACATCTATGTGGAACA
GAAGCAATATATCAGTGCTGTCCAGCTGTATGAAAACTGCCTCAGAAAGTTCTATAAGCACCAGAACACTGAAGTTATGC
TCTATTTGGCCCGGGCCCTCTTCAAGTGTGGCAGGTTGCAGGAATGCAAACAGACTTTGCTGAAGGCTAGACATGTGGCA
CCCAGTGATACAGTTCTTATGTTTAATGTGGCCTTGGTCCTACAGAGGTTAGCTACCTCTGTTTTGAAAGACGAGAAGAG
CAATCTAAAGGAAGTACTTAATGCTGTGAAAGAACTGGAGCTTGCACATAGATACTTCAGTTACTTGAGTAAAGTGGGAG
ATAAAATGAGAATCAATTTGGCCCTTGCTGCCACAGAAGCCAGGCAGTGCTCTGACTTACTGAGCCAGGCCCAATACCAT
GTAGCCCGGGCACGCAAACAAGACGAAGAAGAGAGGGAATTGCGGGCCAAACAAGAGCAAGAAAAAGAATTGTTAAGGCA
GAAACTTCTTAAAGAACAGGAAGAAAAACGACTGAGAGAGAAGGAAGAGAAAAAGAAACTTTTAGAACAGCGGGCCCAGT
ATGTTGAGAAGACCAAAAACATCCTTATGTTTACTGGAGAGACTAAAGCAGCAAAAGAAAAGAAAAGAGGCAGTGGTGGT
GGACGGCGTTCTAAGAAGGGAGAGCTTGATGAATTTGTCAATGATGACACCGATGAAGACCTGCCAGTATCCAAAAAGAA
GAAGAGAAGAAAGGGCAGTGGTAGTGAGCAAGAAGGC

ORF - retro_mluc_2094 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.31 %
Parental protein coverage: 81.01 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALAVSIHYKQGKTEEFVKLLEAARI
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALA....YKQGKTEEFVKLLEAARI
RetrocopyMSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALE-YYKQGKTEEFVKLLEAARI
ParentalDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADKIIMYDQNHLLGRACFCL
DGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADKIIMYDQNHLLGRACFCL
RetrocopyDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADKIIMYDQNHLLGRACFCL
ParentalLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFV
LEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFV
RetrocopyLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFV
ParentalKLNKLEKARLAFSRALELNSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHF
KLNKLEKARLAFSRALELNSKCVGALVGLAVLELN................AYTIDPSNPMVLNHLANHF
RetrocopyKLNKLEKARLAFSRALELNSKCVGALVGLAVLELNXXXXXXXXXXXXXXXXAYTIDPSNPMVLNHLANHF
ParentalFFKKDYSKVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQ
FFKKDYSKVQHL.LHAFHNTEVEAMQAES.YQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQ
RetrocopyFFKKDYSKVQHLVLHAFHNTEVEAMQAESFYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQ
ParentalMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA
MYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA
RetrocopyMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA
ParentalQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNV-GALHFRLGNLGEAKKYFLASLDRAKAEAEHD
QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNV.GALHFRLGNLGEAKKYFLASLDRAKAEAEHD
RetrocopyQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNV<GALHFRLGNLGEAKKYFLASLDRAKAEAEHD
ParentalEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEAL
EHYYNAISVTTSYNLARLYEAMCEFH.AEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEAL
RetrocopyEHYYNAISVTTSYNLARLYEAMCEFHDAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEAL
ParentalQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPTRDREKEKRH
QINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPT.DREKEKRH
RetrocopyQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPTQDREKEKRH
ParentalQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYI
QDRALAIYKQVLRN.A.NLYAANGIGAVLAHKGYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYI
RetrocopyQDRALAIYKQVLRNEATNLYAANGIGAVLAHKGYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYI
ParentalSAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSV
SAVQ.YENCLRKFYKHQNTEV.LYLARALFKCG.LQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSV
RetrocopySAVQLYENCLRKFYKHQNTEVMLYLARALFKCGRLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSV
ParentalLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEE
LKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR..LALAATEARQCSDLLSQAQYHVARARKQDEEE
RetrocopyLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMRINLALAATEARQCSDLLSQAQYHVARARKQDEEE
ParentalRELRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEAAKEKKRGSGGG
RELRAKQEQEKELLRQKLLKEQEEKRLREKEE.KKLLEQRAQYVEKTKNILMFTGET.AAKEKKRGSGGG
RetrocopyRELRAKQEQEKELLRQKLLKEQEEKRLREKEEKKKLLEQRAQYVEKTKNILMFTGETKAAKEKKRGSGGG
ParentalRRSKKGEFDEFVNDDTDEDLPVSKKKKRRKGSGSEQEG
RRSKKGE.DEFVNDDTDEDLPVSKKKKRRKGSGSEQEG
RetrocopyRRSKKGELDEFVNDDTDEDLPVSKKKKRRKGSGSEQEG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_2094 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG00000006212 1 retrocopy
retro_mluc_2094 ,


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