RetrogeneDB ID: retro_mluc_2178

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430078:193014..193710(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNB4
• Ensembl ID: ENSMLUG00000007640
• Aliases: None
• Description: None

Sequence

>retro_mluc_2178
AAGATGCATGCCATTCCTTTGAGGTCCTCCTGGGTGATGACCTGTGCTTACGCCCCCTCTGGTAATTATGTGGCTTGTGG
AGGACTGGACAACATCTGCTCTCTATATAACTTAAAGACCAGAGAGGGAAATGTGAGAGTGAGCTGAGAGTTACCGGGTC
ACATAGGCTACTTGTCCTGCTGCCGTTTTTTAGATGACAGCCAAATTGTTACAAGTTCAGGAGATACAAATTGTGCCCTA
TGGGACACTGAAACTGCCCAGCAGACCACCACATTCACTGGGCATTCTGGAGATGTGATGAGTCTTTCTCTGAGTCCTGA
CATGAGGACTTTTGTTTCTGGTGCTCGTGATGCCTCTTCCAACTTATGGGATATTCGAGATGGAATGTGTAGACAGTCTT
TCTCTGGACATGTGTCAGATATTAATGCTGTCAGTTTTTTTCCAAATGGCTAGGCCTTTGCCACTGGCTCCGATGATGCC
ACTTGCCGTCTCTTTGACCTTCGTGCAGACCAAGAGTTATTATTGTATTCTCATGATAATATTATCTGTGGGATCACCTC
TGTAGCCTTCTCAAAAAGTGGGCGTCTCCTGTTAGCTAGTTATGACGACTTCAATTGTAACGTGTGGGACACACTAAAAG
GAGATCGTGCAGGTGTTCTTGCTGGTCATGACAACCGGGTCAGCTGTCTGGGCGTA

Alignment

ORF - retro_mluc_2178 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.98 %
• Parental protein coverage: 68.24 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHIGYLSCCRFLDDSQIV
          KMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS.YNLKTREGNVRVS.ELPGHIGYLSCCRFLDDSQIV
Retrocopy KMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSLYNLKTREGNVRVS*ELPGHIGYLSCCRFLDDSQIV

Parental  TSSGDTNCALWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFSGHVSD
          TSSGDTNCALWD.ETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGA.DASS.LWDIRDGMCRQSFSGHVSD
Retrocopy TSSGDTNCALWDTETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGARDASSNLWDIRDGMCRQSFSGHVSD

Parental  INAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWD
          INAVSFFPNG.AFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLA.YDDFNCNVWD
Retrocopy INAVSFFPNG*AFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLASYDDFNCNVWD

Parental  TLKGDRAGVLAGHDNRVSCLGV
          TLKGDRAGVLAGHDNRVSCLGV
Retrocopy TLKGDRAGVLAGHDNRVSCLGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2178 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001961	1 retrocopy	retro_chof_1810,
Myotis lucifugus	ENSMLUG00000007640	1 retrocopy	retro_mluc_2178 ,