RetrogeneDB ID: retro_mluc_2251

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430146:872748..874063(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLU7
• Ensembl ID: ENSMLUG00000003091
• Aliases: None
• Description: None

Sequence

>retro_mluc_2251
CAGTATGTTTCTTCAGTGCCATGGTATATTGCTCCATCAAAAAGATCTAAAGAGAATTCCATAGCTAATAAGTACCGCAA
AGGAGCATGTGAAAACTGTGGGGCCATGACACAGAAAAAGAAAGACTGCTTTGAGAGACTTAGGCGAGTTGGAGCAAAAT
TTACAAGAACTGACATAGCTCCATACGAAAATGTCCAGCCTCATCTGATGTTTGACTATGATGGGAAAAGGGATAGGTGG
AATGGCTACAATCCAGAAGAATGCATGGAAATTGTGGAAGAATATGCCAAAGTTGACCTGGCAAAATGAACACGGAAAAC
CCAGAAACTCCAGGAAGAATTAGCCTCAGGAAAATTAGTGGAACAGGCTAATTCTCCAAAACACCAGTGGGAAGAAGAGG
AACCTAATTCTAAAATGGAAAAATACCATAATAGTGAGAATGAGGATGAAGGTAAATATGTAGATGACATTGACATGCCT
GGACAGAACTTTGACTCTAAGAGACCGATTACTATTCGGAATCTCAGGATTCGAGAAGATATTTCAAAATATTTGCAGAA
TTTAGATCTAAATTCTGTTTCGTGTAATCCCAAAACTAGAGCGATGAGAGAAAATCCCTATGCCAATGCAGGAAAGAATC
CAGATGAAGTGAGCTATGTGGGAGACAACTTTGTTAGATACACAAGTGACACTATTTCAATGGTTCAGACACAGTTGTTT
GCATGGGAAGCCTATGACAAGGGATCTGAAGTGCATCTGCAGGCCGATCCTACCAAACTAGAGCTCTTGTACAAGTCTTC
AAGGTAAAAAAAAAATGACTCCAAAGAACAGCAGAAAGAAAGCATCCTGGAAAAGTGTGGTGGCCAAGAACATTTGGATG
CCCCTCCAGCTGAGTTGCTTCTAGCTCAGACGGAAGACTATGTGGAGTACTCAAGGCATGGGACAGCCATTAAAGGATGG
GAGCAGGCTGTCGCCTGCTCCAGATATGAGGAGGATGTGAAGATCCACAATGACACGTGCATCTGGGGATCTTACTTGAA
AGAAGGCCGATGGGGATACAAATGCTGTTACTCTTTTGTCAAACACTCCTATTGCACTAGAGAAGCTGGGGAGGAGATTG
TGAATTCAGAGGAACGTATTGCAAATGATATAACTAGAGAAGAATCTGTGAAAAAAACCTCAAACTCTCATAGAGATGCA
TTAGGAAAAACTACAAGAGGAGAAAAAGAAGAAGCATTGAAAGAGCAGCTCAGATAGTAATGACGAAGAAAAGAAACATG
AAAAACTGAAAAAGGCACTGAATGCAGAGGAGGCC

Alignment

ORF - retro_mluc_2251 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.0 %
• Parental protein coverage: 75.26 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QFSSSVEWY---KRGVKENSITTKYREGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLM
          Q..SSV.WY.......KENSI..KYR.GACENCGAMT.KKKDCFER.RRVGAKFT.T.IAP.E.VQP.LM
Retrocopy QYVSSVPWYIAPSKRSKENSIANKYRKGACENCGAMTQKKKDCFERLRRVGAKFTRTDIAPYENVQPHLM

Parental  FDYDGKRDRWNGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME
          FDYDGKRDRWNGYNPEE.M.IVEEYAKVDLAK.T.K.QKLQEELASGKLVEQANSPKHQW.EEEPNS.ME
Retrocopy FDYDGKRDRWNGYNPEECMEIVEEYAKVDLAK*TRKTQKLQEELASGKLVEQANSPKHQWEEEEPNSKME

Parental  KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
          K.HNSE.EDE.KY.DDIDMPGQNFDSKR.IT.RNLRIREDI.KYL.NLD.NS....PKTRAMRENPYANA
Retrocopy KYHNSENEDEGKYVDDIDMPGQNFDSKRPITIRNLRIREDISKYLQNLDLNSVSCNPKTRAMRENPYANA

Parental  GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDFKEQQKE
          GKNPDEVSY.GDNFVRYT.DTISM.QTQLFAWEAYDKGSEVHLQADPTKLELLYKS......D.KEQQKE
Retrocopy GKNPDEVSYVGDNFVRYTSDTISMVQTQLFAWEAYDKGSEVHLQADPTKLELLYKSSRXXXXDSKEQQKE

Parental  SILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYEEDVKIHNHTHIWGSYWKEGR
          SILEK.GGQEHLDAPPAELLLAQTEDYVEYSRHGT.IKG.E.AVACS.YEEDVKIHN.T.IWGSY.KEGR
Retrocopy SILEKCGGQEHLDAPPAELLLAQTEDYVEYSRHGTAIKGWEQAVACSRYEEDVKIHNDTCIWGSYLKEGR

Parental  WGYKCCHSFVKYSYCTGEAGKEIVNSEECLVDDITGEESV-KKPQTLMEIHQEKLKEDKKKKKKKKKKHR
          WGYKCC.SFVK.SYCT.EAG.EIVNSEE....DIT.EESV.KKPQTL.E.H.EKL.E.KKKK..K.....
Retrocopy WGYKCCYSFVKHSYCTREAGEEIVNSEERIANDITREESV>KKPQTLIEMH*EKLQEEKKKKH*KS----

Parental  KSSSDSDDEEKKHEKLKKALNAEEA
          .S.S.......KHEKLKKALNAEEA
Retrocopy SSDSNDEEK--KHEKLKKALNAEEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2251 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000004484	1 retrocopy	retro_cpor_883,
Dipodomys ordii	ENSDORG00000006239	3 retrocopies	retro_dord_125, retro_dord_140, retro_dord_563,
Ficedula albicollis	ENSFALG00000013473	1 retrocopy	retro_falb_12,
Myotis lucifugus	ENSMLUG00000003091	2 retrocopies	retro_mluc_2250, retro_mluc_2251 ,
Oryctolagus cuniculus	ENSOCUG00000011743	1 retrocopy	retro_ocun_818,
Otolemur garnettii	ENSOGAG00000012301	1 retrocopy	retro_ogar_1519,
Sorex araneus	ENSSARG00000012209	2 retrocopies	retro_sara_409, retro_sara_731,