RetrogeneDB ID: retro_mluc_2323

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430209:411198..415519(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026669
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AQR
• Ensembl ID: ENSMLUG00000006223
• Aliases: None
• Description: None

Sequence

>retro_mluc_2323
ATCGAAGATATATCTGAAAAAAGAGATTGTCAATTCAAGGTTTGCCATCAGAAAGATAATGCTCTTGGAATTTAGCCAGT
ACCCTGAAAATTACCTGTGGATGAATTATTCTCCGGACGTGTCCAGCAAGGCCTATTTAATGTTCATCTGTTGTATGGTG
AATGAGAAGTTCAGAGAAAATGTCCCTGCATGGGAGACTTTCAAGAAGAAGCCAGACCACTTCCCATTCTTTTTCAAGTG
CATCTTGAAAGCAGCATTGGCTGGAACTGATGGTGAGTTTTCACTCCATGAACAGACAGTCTTATTGCTTTTTCTTGATC
ACTGCTTCAATAGTTTGGAAGTAGACTTGATACGAAGTCAAGTACAGCAGCTTATCTCCCTCCCAATGTGGATGGGCTTA
CAGCCTGCACGCTTGGAATTAGAATTTAAAAAGACACCTAAGCTAAGAAAATTCTGGAACTTGATTAAAAAGAACGATGA
AAAGATGGATCCAGAAGCAAGAGAACAAGCCTATCAGGAAAGAAGATTTCTCTCACAGCTCATCCAGAAGTTTATCTCCG
TGCTGAAGTCAGTCCCACTTTCTGAACCTGTCACTATGGACAAAGTTCATTACTGTGAAAGATTCATTGAACTTATGATT
GATCTAGAGGCCCTACTCCCCACAAGGCGCTGGTTTAATACCATCCTGGACGACTCCCACCTTTTGGTTCACTGCTACCT
TTCCAACCTTGTTCATAGGGAAGAGGATGGCCATCTTTTTTCCCAGCTTTTGGACATGCTTAAGTTCTACACTGGTTTCG
AGATCAATGACCAGACTGGAAATGCTCTGACAGAGAACGAGATGACTACCATTCACTATGATAGAATCACTTCTCTACAG
AGAGCTGCTTTTGCACATTTCCCTGAACTCCATGGTTTTGCCCTCTCAAATGTGGCAGAAGTAGATACTCGGGGATCCTT
GGTCAAGTTCTTTGGACCTCTTAGTGCAAATACACTCCACCAGGTGGCATCGTACCTCTGCTTGTTACCAACTCTTCCTA
AAACCGAAGACACAACTTTTGATAAAGAATTTCTTCTAGAATTGCTGGTGTCTCGTCATGAACGTCGAATTTCTCAGATT
CAGCAGTTGAACCAGATGCCTTTGTATCCAACTGAGAAAATCACGTGGGATGAAAATATTGTCCCAACCGAGTGCTACTC
AGGGGAAGGTTGTCTTGCTCTTCCCAAGCTAAATTTGCAGTTTTTGACTCTTCATGATTACCTCCTAAGGAACTTTAATC
TCTTCCACTTAGAATCAACTTATGAAATTAGGCAGGACATCGAAGACACTGTCAGCAGAATGAAGCCTTGGCAGTCTGAA
TATGGCGGTGTAGTATTTGGTGGCTGGGCGCGAATGGCTCAACCCATTGTGGCTTTCACTGTGGTTGAGGTTGCCAAACC
CAACATAGGCGAAAACTGGCCAACCAGAGTTCATGCAGATGTCACCATCAATCTCAATGTCAGAGATCACATCAAAGATG
AATGGGAAGGCCTTCGTAAGCATGATATATACTTTTTAATTACTGTGCGTCCCACAAAACCGTATGGTACCAAGTTTGAC
CAGAGGAGACCTTTTATTGAGCAGGTTGGCCTGGTTTATGTCCGAGGCTGTGAAATCCAGGGCATGCTGGATGATAAAGG
ACGTGTCATCGAAGACGGACCCGAACCCAGACCCAATCTTAGAGGAGAGTCAAGGACATTTAGAGTGTTTTTGGATCCAA
ACCAGTATCAACAAGATATGACCAATACTATACAAAATGGAGCAGAAGATGTGTATGAAACTTTCAATATAATAATGAGG
AGAAAACCAAAAGAAAATAACTTTAAGGCTGTGCTGGAGACTATTCGGAACCTGATGAACACTGACTGCATGGTACCTGC
CTGGCTGCATGACATCATTTTAGGTTACGGGGATCCAAGCAGTGCACATTATTCAAAAATGCCCGATCAGATCGCCACCC
TCGATTTCAACGACACATTTCTCTCCATTGAGCATTTGAAAACCAGCTTCCCTGGGCATAATGTTAAAGTAACTGTGGAT
GACCCAGCTCTACAGATACCCCCTTTCAGGATAACTTTTCCAGTAAGAAGCGGAAAAGGGAAGAAAAGGAAAGACATGGA
TGGGGAAGATGAAGACACTGAAGAGGCCAAGACCTTAATTGTTGAACCTCATGTTATTCCTAATCGGGGTCCTTACCCTT
ACAACCAACCCAAGCGTAATACAATTCAGTTCACTCATACACAGATAGAGGCCATCCGTGCTGGAATGCAGCCTGGGCTA
ACTATGGTTGTGGGCCCACCGGGTACAGGAAAAACAGATGTGGCGGTTCAGATCATATCCAATATATACCACAATTTCCC
AGAGCAGAGAACTCTGATTGTTACTCATTCCAATCAGGCCCTGAACCAGTTGTTTGAGAAAATCATGGCTTTAGACATTG
ACGAGCGCCACCTCCTGCGTCTTGGTCATGGAGAAGAAGAGCTGGAGACAGAGAAAGATTTCAGCAGGTACGGAAGAGTT
AATTATGTCCTGGCTCGAAGAATAGAACTTTTAGAAGTCAAACGATTGCAAAAAAGCCTAGGGGTTCCAGGGGATGCTTC
ATATACTTGTGAAACAGCAGGCTGTTTCTTCTTATATCAGGTAATGTCTCGCTGGGAAGAATATATCAGCAAAGTGAAAA
ATGAAGGTAACACATCGCCAGATGTCACGGAAGTCTCCACTTTCTTCCCTTTTCATGAATACTTTGCAAATGCTCCTCAA
CCCATTTTTAAAGGTCGGTCTTATGAAGAAGACATGGAAATTGCTGAAGGATGTTTCAGGCATATTAAGAAAATCTTTAC
TCAGCTTGAGGAATTCAGGGCCTCTGAACTGCTTCGAAGTGGACTGGACAGATCTAAATACCTTTTGATGAAAGAAGCCA
AAATCATTGCCATGACCTGTACTCATGCGGCCTTAAAACGACATGATTTAGTCAAGTTAGGTTTCAAGTATGACAACATT
TTAATGGAGGAGGCTGCTCAGATCCTGGAGATAGAAACGTTTATACCTCTTCTTCTACAGAATCCTCAGGATGGTTTTAG
CCGACTGAAACGATGGATTTTGATTGGTGATCATCACCAGTTACCTCCGGTCATTAAGAACATGGCCTTTCAGAAGTATT
CCAACATGGAGCAGTCTCTCTTCACTCGCTTCGTCCGGATTGGAGTTCCTACTGTGGACCTCGATGCCCAAGGGAGAGCC
AGGGCAAGCTTGTGCAACCTGTACAACTGGCGATACAAGAAACTAGGCAACTTACCCCATGTGCAGCTCTTGCCGGAGTT
TAGCACAGCAAATGCTGGCTTGCTGTATGACTTCCAGCTCATCAATGTTGAAGATTTTCAGGGAGTGGGAGAGTCTGAGC
CTAATCCTTACTTTTATCAGAATCTTGGAGAGGCAGAATATGTAGTGGCACTCTTTATGTACATGTGTTTACTTGGCTAC
CCTGCTGACAAGATCAGTATTCTAACAACTTATAATGGGCAAAAGCATCTTATTCGTGACATTATCAATAGACGATGTGG
GAGCAATCCATTGATTGGAAGACCAAATAAGGTGACAACTGTTGACAGATTTCAAGGTCAACAGAATGATTATATTCTTC
TTTCTCTCGTACGAACCAGGGCAGTGGGCCATCTGAGGGATGTTCGTCGCTTAGTGGTGGCCATGTCTCGAGCCAGACTT
GGACTTTATATCTTCGCCAGAGCATCCCTCTTACAAAACTGTTTCGAACTCACTCCAGCTTTCAGCCAGCTCACAGCCCG
CCCACTTCATTTGCATATAATTCCAACAGAACCTTTCCCAACCTGTAGAAAGAATGGAGAGGGGCCATCTCATGAAGTAC
AGGTAATAAAGAATATGCCCCAAATGGCAAACTTTGTGTACAACATGTACATGCACCTGATACAGACCACCCATCACTAT
CATCAGACTTTATTGCAGTTACCACCTGCTATGGTAGAAGAAACTGAGGAAGTTCAAAGTCAGGAAACAGAAGAAGAGGG
CATGCCTACTCAGGCTGACATCCCCTGTCTAACAGATGCCAGCGTCAGTCACGAACTGTTGGCCTCTCAGACTGAGGCCA
CCCCCGGTGAGACGGAGGCCACCCCTGGTTGGGCAGGGACCGGTTCCAGTCCAGACGCCACCTCCGCTGTCTCTGAAGTC
ACTGCTGCTGCGGCTGGCCCCGAGGCTGTGCCCACAGAGGCTGGCACCCAGCAAGATGCCACATCTGCCCCAGAGACTAA
A

Alignment

ORF - retro_mluc_2323 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.33 %
• Parental protein coverage: 96.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IEDIYEK-EIVKSRFAIRKIMLLEFSQYLENYLWMNYSPEVSSKAYLMSICCMVNEKFRENVPAWETFKK
          IEDI.EK.EIV.SRFAIRKIMLLEFSQY.ENYLWMNYSP.VSSKAYLM.ICCMVNEKFRENVPAWETFKK
Retrocopy IEDISEK>EIVNSRFAIRKIMLLEFSQYPENYLWMNYSPDVSSKAYLMFICCMVNEKFRENVPAWETFKK

Parental  KPDHFPFFFKCILKAALAETDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLE
          KPDHFPFFFKCILKAALA.TDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLE
Retrocopy KPDHFPFFFKCILKAALAGTDGEFSLHEQTVLLLFLDHCFNSLEVDLIRSQVQQLISLPMWMGLQPARLE

Parental  LELKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSEPVTMDKVHYCERFI
          LE.KKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSEPVTMDKVHYCERFI
Retrocopy LEFKKTPKLRKFWNLIKKNDEKMDPEAREQAYQERRFLSQLIQKFISVLKSVPLSEPVTMDKVHYCERFI

Parental  ELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNALTEN
          ELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNALTEN
Retrocopy ELMIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVHREEDGHLFSQLLDMLKFYTGFEINDQTGNALTEN

Parental  EMTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVDTRGSLVKLFGPLSSNTLHQVASYLCLLPTLPKTE
          EMTTIHYDRITSLQRAAFAHFPEL..FALSNVAEVDTRGSLVK.FGPLS.NTLHQVASYLCLLPTLPKTE
Retrocopy EMTTIHYDRITSLQRAAFAHFPELHGFALSNVAEVDTRGSLVKFFGPLSANTLHQVASYLCLLPTLPKTE

Parental  DTTFDKEFLLELLVSRHERRISQIQQLNQMPLYPTEKIIWDENIVPTEYYSGEGCLALPKLNLQFLTLHD
          DTTFDKEFLLELLVSRHERRISQIQQLNQMPLYPTEKI.WDENIVPTE.YSGEGCLALPKLNLQFLTLHD
Retrocopy DTTFDKEFLLELLVSRHERRISQIQQLNQMPLYPTEKITWDENIVPTECYSGEGCLALPKLNLQFLTLHD

Parental  YLLRNFNLFRLESTYEIRQDIEDSVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTR
          YLLRNFNLF.LESTYEIRQDIED.VSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTR
Retrocopy YLLRNFNLFHLESTYEIRQDIEDTVSRMKPWQSEYGGVVFGGWARMAQPIVAFTVVEVAKPNIGENWPTR

Parental  VRADVTINLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFDRRRPFIEQVGLVYVRGCEIQGMLDDK
          V.ADVTINLNVRDHIKDEWEGLRKHD..FLITVRPTKPYGTKFD.RRPFIEQVGLVYVRGCEIQGMLDDK
Retrocopy VHADVTINLNVRDHIKDEWEGLRKHDIYFLITVRPTKPYGTKFDQRRPFIEQVGLVYVRGCEIQGMLDDK

Parental  GRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRKPKENNFKAVLETIR
          GRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRKPKENNFKAVLETIR
Retrocopy GRVIEDGPEPRPNLRGESRTFRVFLDPNQYQQDMTNTIQNGAEDVYETFNIIMRRKPKENNFKAVLETIR

Parental  NLMNTDCVVPAWLHDIILGYGDPSSAHYSKMPNQIATLDFNDTFLSIEHLKTSFPGHNVKVTVDDPALQI
          NLMNTDC.VPAWLHDIILGYGDPSSAHYSKMP.QIATLDFNDTFLSIEHLKTSFPGHNVKVTVDDPALQI
Retrocopy NLMNTDCMVPAWLHDIILGYGDPSSAHYSKMPDQIATLDFNDTFLSIEHLKTSFPGHNVKVTVDDPALQI

Parental  PPFRITFPVRSGKGKKRKDVDGEDEDTEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGM
          PPFRITFPVRSGKGKKRKD.DGEDEDTEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGM
Retrocopy PPFRITFPVRSGKGKKRKDMDGEDEDTEEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIRAGM

Parental  QPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEE
          QPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEE
Retrocopy QPGLTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDERHLLRLGHGEE

Parental  ELETEKDFSRYGRVNYVLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVMSRWEEYISKVKNK
          ELETEKDFSRYGRVNYVLARRIELL.EVKRLQKSLGVPGDASYTCETAG.FFLYQVMSRWEEYISKVKN.
Retrocopy ELETEKDFSRYGRVNYVLARRIELL-EVKRLQKSLGVPGDASYTCETAGCFFLYQVMSRWEEYISKVKNE

Parental  GNTSPDVTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS
          GNTSPDVTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS
Retrocopy GNTSPDVTEVSTFFPFHEYFANAPQPIFKGRSYEEDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRS

Parental  KYLLVKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMI
          KYLL.KEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWI.I
Retrocopy KYLLMKEAKIIAMTCTHAALKRHDLVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWILI

Parental  GDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRIGVPTVDLDAQGRARASLCNLYNWRYKKLGNLPHVQLLP
          GDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRIGVPTVDLDAQGRARASLCNLYNWRYKKLGNLPHVQLLP
Retrocopy GDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRIGVPTVDLDAQGRARASLCNLYNWRYKKLGNLPHVQLLP

Parental  EFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQK
          EFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQK
Retrocopy EFSTANAGLLYDFQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFMYMCLLGYPADKISILTTYNGQK

Parental  HLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIF
          HLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIF
Retrocopy HLIRDIINRRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAMSRARLGLYIF

Parental  ARVSLFQNCFELTPAFSQLTARPLHLHIIPTEPFPTCRKNGERPSHEVQVIKNMPQMANFVYNMYMHLIQ
          AR.SL.QNCFELTPAFSQLTARPLHLHIIPTEPFPTCRKNGE.PSHEVQVIKNMPQMANFVYNMYMHLIQ
Retrocopy ARASLLQNCFELTPAFSQLTARPLHLHIIPTEPFPTCRKNGEGPSHEVQVIKNMPQMANFVYNMYMHLIQ

Parental  TSHHYHQTLLQLPPAMVEESEEVQSQETEMETEEEGMPTQADIPCLTDASVSHELLASQTEATPGEMEAT
          T.HHYHQTLLQLPPAMVEE.EEVQSQETE....EEGMPTQADIPCLTDASVSHELLAS............
Retrocopy TTHHYHQTLLQLPPAMVEETEEVQSQETE----EEGMPTQADIPCLTDASVSHELLASXXXXXXXXXXXX

Parental  PGRAGTGSSPEATSAVSEVTAAAAGPEAVPTEAGTQQDATSAPETK
          ...AGTGSSP.ATSAVSEVTAAAAGPEAVPTEAGTQQDATSAPETK
Retrocopy XXWAGTGSSPDATSAVSEVTAAAAGPEAVPTEAGTQQDATSAPETK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2323 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000006223	1 retrocopy	retro_mluc_2323 ,