RetrogeneDB ID: retro_mluc_2407

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430328:239202..240093(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003824
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: EIF3G
• Ensembl ID: ENSMLUG00000014196
• Aliases: None
• Description: Eukaryotic translation initiation factor 3 subunit G [Source:UniProtKB/TrEMBL;Acc:G1PPI2]

Sequence

>retro_mluc_2407
GACAAATGCGTGTCCAGCAAGCTCCTCAAGGGGATCCCTTTGGCCACTAGCGACACGAGCCCAGAGCCCGAGCTGCTGCC
AGGAGCTCCACTTCTGGTACCCAAGGAGGTCATCAATGGGAACATCAAGACAGTAACCGAGTACAAGATAGATGAAGATG
GCAAGAAGTTCAAGATTGTCCGCACCTTCAGAATCGAGACCCGGAAGGCCTCAAAGGCAGTTGCAAGGAGGAAGAACTGG
AAGAAGTTTGGGAACTCGGAGTTTGACCCACCAGGACCCAATGTGGCCACCACCACGGTCAGCGATGATGTGTCCATGAT
CTTTATCACCAGCAAGGAGGATCTGAACTGCCAGGAGGAGGAGGACCCAATGAACAAGCTCAAGGGCCAGAAGATCGTGT
CCTGCCGTATCTGCAAGGGCGACCACTGGACCACCCGCTGTCCCTACAAGGACACGCTGGGGCCCACACAGAAGGAGCTG
GCTGAGCTGCTGGGCCTGTCCACCGGCGAGAAGGAGAAACTGCCTGGAGAGCTGGAGCCTGTGCAGGCGGCCTGAACAAG
ACGGAAGTACGTGCCACCGAGCCTGCGGGATGGGGCCAGCTGCCGTGGGGAGTCCATGCAGCCCAACCGCAGAGCCGATG
ACAATGCCACCATCCGCATCACCAACCTGTCAGAGGACACCCGTGAGACAGACCTGCAAGAGCTCTTTAGACCCTTTGGC
TCAATCTCCCGCATCTACTTGGCGAAGGACAAGACCACCGGCCAGTCCAAGGGCTTTGCCTTCATCAGCTTCCACCGCCG
TGAGGACGCTGCCCGCACCATTGCCGGAGTGTCCAGCTTTGGCTACGACCACCTCATCCTCAACATCGAGTGGGCTAAGC
CATCCACCAAC

Alignment

ORF - retro_mluc_2407 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.62 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DKGVSSELIMGIPWATGDTSPEPELLTGAPLPAPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKA
          DK.VSS.L..GIP.AT.DTSPEPELL.GAPL..PKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKA
Retrocopy DKCVSSKLLKGIPLATSDTSPEPELLPGAPLLVPKEVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKA

Parental  SKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKG
          SKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSM.FITSKEDLNCQEEEDPMNKLKGQKIVSCRICKG
Retrocopy SKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMIFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKG

Parental  DHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRRGESMQPN
          DHWTTRCPYKDTLGP.QKELAE.LGLSTGEKEKLPGELEPVQAA.....KYVPPSLRDGAS.RGESMQPN
Retrocopy DHWTTRCPYKDTLGPTQKELAELLGLSTGEKEKLPGELEPVQAA*TRR-KYVPPSLRDGASCRGESMQPN

Parental  RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG
          RRADDNATIR.TNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR.IAGVS.
Retrocopy RRADDNATIRITNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARTIAGVSS

Parental  FGYDHLILNVEWAKPSTN
          FGYDHLILN.EWAKPSTN
Retrocopy FGYDHLILNIEWAKPSTN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2407 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000021436	1 retrocopy	retro_ecab_713,
Myotis lucifugus	ENSMLUG00000014196	1 retrocopy	retro_mluc_2407 ,
Otolemur garnettii	ENSOGAG00000014463	3 retrocopies	retro_ogar_101, retro_ogar_1577, retro_ogar_1661,
Rattus norvegicus	ENSRNOG00000020619	1 retrocopy	retro_rnor_1731,