RetrogeneDB ID: retro_mluc_2432

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430390:231487..232478(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025086
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000006550
• Aliases: None
• Description: None

Sequence

>retro_mluc_2432
CAGAAAGCCATTGATCTGGTGACAAAAGCCACAGAAGAAGATAAAGCCAAGAATTACGAGGAGGCGCTCCGGCTCCACCA
GCGCGCGGTGGAGTGTTTCCTACACGCTATCAAATATGATGCACACAGCGACGAGGCCAAGGAGAGCATTCCAGCCAAGT
GCATGCAATACCTCTACCGGGCAGAGAAGCTGAAGGGTTACCTACGGAACAAAGAGAAGCACGGCAAGAAGCCAGTCACA
GAGAACCAGAGTGAGAGCAAGGTCAGTGATAGTGGCAGTGCAGGGGGTAATCCAGAGAAAAAGAAATTGCAAGAACTGAC
GGGAGCCGTCCTGATGGAGAAGCCCAACATTCGGTGGAGTGACGTGGCCGGGCTGGAGTTGGCCAAGGAGGCCCTCAAAT
AAGCTGTCATTTTGCCAATTAAATTCCCACACTTGTTCACAGGCAAGCGTACCCTTGGCGAGGGATTCTGCTCTTTGGAC
ACCCTGGCACCAGGAAATCCTACCTGGCCAAAGCGGTGGCAACAGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCC
TCAGACTTGATGTCTAAGTGGTTGGGGAGAGTGAGAAGCTAGTCAAGAACCCGTTTGAGCTGGCCAGGCAGCACAAGCCT
TCCATAATCTTCATCGACGAGGTGGATTCCCTCTGCGGATCCCGCAATGAAAATGAGAGCGAGGCTGCCCGAAGGATCAA
AACAGAGTTCTTGGTCCAGACGCAAGGAGTGGGGAATAACAACGATGGGACTCTGGTTCTTGGTGCCACAAACATCCCCT
GGGTGTCGGATTCGGCCATTAGAAGGAGGTTTGAAAAGCGGATTCACATCCCGTTGCCGGAGGAGGCTGCCCATTCCCAG
ATGTTCCGGTTGCATCTGGGCAGCACGCCACACAGCCTCACGGACGCCAATATCCAGGAGCTGGCCCGGAAGACAGAGGG
CTACTCAGGTGCAGACATCAGCATCGTTGTG

Alignment

ORF - retro_mluc_2432 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.91 %
• Parental protein coverage: 75.39 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRN
          QKAIDLVTKATEEDKAKNYEEALRL.Q.AVE.FLHAIKY.AHSD.AKESI.AKCMQYL.RAEKLK.YLRN
Retrocopy QKAIDLVTKATEEDKAKNYEEALRLHQRAVECFLHAIKYDAHSDEAKESIPAKCMQYLYRAEKLKGYLRN

Parental  KEKHGKKPVKENQSESKGLKKTDLDSDSEGDNPEKKKLQEQLMGAVMMEKPNIRWSDVAGLELAKEALKE
          KEKHG....K....E.....K...DS.S.G.NPEKKKLQE.L.GAV.MEKPNIRWSDVAGLELAKEALK.
Retrocopy KEKHG----KKPVTENQSESKVS-DSGSAGGNPEKKKLQE-LTGAVLMEKPNIRWSDVAGLELAKEALK*

Parental  AVILPIKFPHLFTGKRT-PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLG-ESEKLV
          AVILPIKFPHLFTGKRT.PWRGILLFG.PGT.KSYLAKAVATEANNSTFFSVSSSDLMSKWLG.ESEKLV
Retrocopy AVILPIKFPHLFTGKRT<PWRGILLFGHPGTRKSYLAKAVATEANNSTFFSVSSSDLMSKWLG<ESEKLV

Parental  KNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDS
          KN.FELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQ.QGVGNNNDGTLVLGATNIPWV.DS
Retrocopy KNPFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQTQGVGNNNDGTLVLGATNIPWVSDS

Parental  AIRRRFEKRIYIPLPEEAARSQMFRLHLGSTPHSLTDANIQELARKTEGYSGADISIIV
          AIRRRFEKRI.IPLPEEAA.SQMFRLHLGSTPHSLTDANIQELARKTEGYSGADISI.V
Retrocopy AIRRRFEKRIHIPLPEEAAHSQMFRLHLGSTPHSLTDANIQELARKTEGYSGADISIVV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2432 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007309	1 retrocopy	retro_meug_1360,
Myotis lucifugus	ENSMLUG00000006550	2 retrocopies	retro_mluc_2432 , retro_mluc_2513,
Mus musculus	ENSMUSG00000031913	1 retrocopy	retro_mmus_1038,
Otolemur garnettii	ENSOGAG00000016975	1 retrocopy	retro_ogar_391,
Tarsius syrichta	ENSTSYG00000012535	1 retrocopy	retro_tsyr_1246,