RetrogeneDB ID: retro_mluc_2433

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430395:180448..181342(+)
• Located in intron of: ENSMLUG00000006696

Retrocopy information

• Ensembl ID: ENSMLUG00000015823
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CALR
• Ensembl ID: ENSMLUG00000012776
• Aliases: None
• Description: None

Sequence

>retro_mluc_2433
ATGCTGCTACCCATGCCGCTGCTGCTCGGCCTTCTCGACCTGGTCACTGCCGAACCCGTCGTCTCCTTCAAGGAGCAGTT
TTTGGACAGAGACAGGTGGACCAACCACTGGATCGAATCCAAACACAAGTCCCATTTTGGCAAATTCATCCTCAGTGCCA
TCAAGTTCTATGGTGACCTGGACAAGGATAAAGGGCTGCAGACGAGCCAGGATGCCCGCTTTTACGCCTTGTCTGCCAGA
TTTGAGCCTTTCAGCAACAAGGACCAGTTGGTGGTGCAGTTTACTGTGAAACATGAGCAGAACATCGACTGCGGGGGCGG
CTATGCGAAGCTATTTCCAGATAGTTTGGACCAGACTGACATGCACGGAGACTCTGAATACAAAATCATGTTTGGCCCTG
ACATCTGTGGCCCTGGGACCAAGAAGGTTCGTGTTATCTTCAACTACAAGGGCAAGAACGTGCTCATCAACAAGGACATC
CGTTGCAAGGATGATGAACTCACACACCTGTATACACTGATTGTAGGGCCCAATAACACCTACCAGTAAAAATTCACAAC
AGCCAGGTGGGGTCTGGCTCTCTGGAGGATGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATCCTGATGCTTCAAA
GCCTGAAGACTGGATGAGCGGGCGATGACTGATGACCCCACTGTCTCCAAACGTGAGGACTGGGACAAGCCCGAGCACAT
CCCTAACCCTGATGCTAAGAAGCCTAAGGACTGGGATGAAGAGATGGATGGAGAGTGGGAGCCACCAGTGATTCAGAACC
CAGAATACAAGGGCAAGTGGAAGCCCAGAAGATCGACAACCTGGATTACAAGGGCACTTGGATTCATCCAGAGATCGACA
ACCCCGAGTATTCA

Alignment

ORF - retro_mluc_2433 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.12 %
• Parental protein coverage: 72.12 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MLLPVPLLLGLLGLVAAEPAVYFKEQFLDGDGWTDRWTESKHKSDFGKFVLSAGKFYGDQDKDKGLQTSQ
          MLLP.PLLLGLL.LV.AEP.V.FKEQFLD.D.WT..W.ESKHKS.FGKF.LSA.KFYGD.DKDKGLQTSQ
Retrocopy MLLPMPLLLGLLDLVTAEPVVSFKEQFLDRDRWTNHWIESKHKSHFGKFILSAIKFYGDLDKDKGLQTSQ

Parental  DARFYALSARFEPFSNKDQTLVVQFTVKHEQNIDCGGGYVKLFPDSLDQTDMHGDSEYNIMFGPDICGPG
          DARFYALSARFEPFSNKDQ.LVVQFTVKHEQNIDCGGGY.KLFPDSLDQTDMHGDSEY.IMFGPDICGPG
Retrocopy DARFYALSARFEPFSNKDQ-LVVQFTVKHEQNIDCGGGYAKLFPDSLDQTDMHGDSEYKIMFGPDICGPG

Parental  TKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYE-VKIDNSQVESGSLEDDWDFLPPKKIK
          TKKV.VIFNYKGKNVLINKDIRCKDDE.THLYTLIV.P.NTY..VKI.NSQV.SGSLEDDWDFLPPKKIK
Retrocopy TKKVRVIFNYKGKNVLINKDIRCKDDELTHLYTLIVGPNNTYQ<VKIHNSQVGSGSLEDDWDFLPPKKIK

Parental  DPDASKPEDW-DERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPR
          DPDASKPEDW.DERA..DDPT.SK.EDWDKPEHIP.PDAKKP.DWDEEMDGEWEPPVIQNPEYKG.WKPR
Retrocopy DPDASKPEDW<DERAMTDDPTVSKREDWDKPEHIPNPDAKKPKDWDEEMDGEWEPPVIQNPEYKGKWKPR

Parental  -QIDNPDYKGTWIHPEIDNPEYS
          ..IDN.DYKGTWIHPEIDNPEYS
Retrocopy <KIDNLDYKGTWIHPEIDNPEYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2433 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012776	1 retrocopy	retro_mluc_2433 ,
Pteropus vampyrus	ENSPVAG00000014715	2 retrocopies	retro_pvam_1071, retro_pvam_1428,