RetrogeneDB ID: retro_mluc_2438

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430399:298757..299304(+)
• Located in intron of: ENSMLUG00000016638

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATPBD4
• Ensembl ID: ENSMLUG00000010097
• Aliases: None
• Description: None

Sequence

>retro_mluc_2438
AGGGTTGTAGCTCTGATCGGTGGTGGGAAGGACAACTGTTACAATACGATGCAGTGCATTGCTGCTGTGCATTAGATTGT
TGTTTTAGCAAATCTAAGACCAGCTGAAAACCAAGTGGGGTCAGGTGAACTGGATAGCTACATGTATCAGACAGTGGGTC
CGCATGCCATTGATTTGTATGAAGAAGCAATGGCTCTTCCCCCTCTGTTGCCGTACCATAAGAGAAAGGAGTGTGGGTAC
AGGATGAGTGTACACCAAGTGTGAAGGTGATGAGGCTGAAGATCTCCATGAGCTTTGAAACTTCAGGAAAAAGAAGCGGA
AGGAATGTCAGTAGGTTCTGTACTTTCTGGTTATCAGCATGTTTAGTAGAAAATGTGTGTAAAGGCTTAATTTTCAGCCT
TTAGCTTACCTTTGGTAGAGAAACCAAAATTTGCTCTGAGCGATGACAGGCTCTAACATTCAGGCAATCATCATAAAAGT
AGCAGCTTTGGGTTTAGACCCAGATAAGCATTTAGGAAAAACCCTACATCAAATGGAGCCTTATCTC

Alignment

ORF - retro_mluc_2438 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.79 %
• Parental protein coverage: 69.66 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RVAALISGGKDSCYNMMQCIAAGHQIVALANLRPPENQVGSDELDSYMYQTVGHHAIDLYAEAMAL-PLY
          RV.ALI.GGKD.CYN.MQCIAA.H.IV.LANLRP.ENQVGS.ELDSYMYQTVG.HAIDLY.EAMAL.PL.
Retrocopy RVVALIGGGKDNCYNTMQCIAAVH*IVVLANLRPAENQVGSGELDSYMYQTVGPHAIDLYEEAMAL>PLC

Parental  RRTIRGRSVDTGRVYSKCEGDEVEDLYEL-LKLVKEKEEVEGISVGAILSDYQRV-RVENVCK-RLNLQP
          .RTIR.RSV.TG.VY.KCEGDE.EDL.EL.LKL.....E.EG.SVG..LS.YQ.V..VENVCK.RLN.QP
Retrocopy CRTIRERSVGTG*VYTKCEGDEAEDLHEL<LKL--QEKEAEGMSVGSVLSGYQHV<LVENVCK<RLNFQP

Parental  LAYLWQRNQEDLLREMIASNIQAIIIKVAALGLSPDKHLGKTLDQMEPHL
          LAYLW.RNQ..LL..M..SNIQAIIIKVAALGL.PDKHLGKTL.QMEP.L
Retrocopy LAYLW*RNQ-NLL*AMTGSNIQAIIIKVAALGLDPDKHLGKTLHQMEPYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2438 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000012219	1 retrocopy	retro_dord_339,
Myotis lucifugus	ENSMLUG00000010097	1 retrocopy	retro_mluc_2438 ,