RetrogeneDB ID: retro_mluc_2441

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430409:222555..223592(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004090
• Aliases: None
• Description: None

Sequence

>retro_mluc_2441
TTCAGGAACCCTGTGCGATGCTGTGAGAAGATTTCATGGAAAACTTTCCTCAAGTACTCAGACGAAGTCCTGGCTGTTTT
CAAGAATTATAAATTAGGTGATACTCAGGCCTCAAGAAAAAAGACGGGAGAATTAAAAACAGGAGGAGAACATGTATATG
GTGCAACATTTTTAACAAGTGAAAAGTTGCTGGGTTTACAACTGAGTGACAGTAACTTTCGCCGACACATTCTACTGCAG
TATCTCATTTTATTCCAATATCTTAAGGGACAGGTGAAATCCAAATGTTCAAACGATGTTTTAACTGATGAGCAGTCACT
CTGGATTGAAGGTACTACAAAATCAGTTTATCAACTGCTCTCTGAAAACCCACCCGATGGAGAGAGATTTTCAAAGATGG
TAGAGCATATATTAAACACTGAAGAAAACTGGAACTCATGGAAAAATGAAGGCTGCCCAAGTTTTGTGAAGGAAAGAACA
TCAGATACTAAGCCGACGAGAGCAGTACGAAAGAGAACAGCACCAGAGGACTTCCTGGGGAAAGGGCCCAACAAAAAGAT
TCTGAAGGGAAAGGGGGCGTTAACAAGCCTTTGGGATCTCTGCCCGGATAATATGGAAGCTTGTAAATCAGCCCCCAGAG
GCTATATGCCAACTTTGGAGGAATTCTTTGAAGAAGCCATTGAACAGGCAGACCCGGAAAGCATGATTGAGAATGAATAT
AAGGTTGTGAACAATCCAAATTATGGTTGGAGAGCCCTGAGACTGTTAGCACGGAGAAGCCCTCACTTCTTCCAGCCAAC
CAAACAACAGTTCAAAAGTTTGCCAGAATATCTCGAAAACATGGTACTAAAGCTAGCAATGGAATAACCACCTCCTTCTG
AAGAAATAAAAACAGGTGAGGGTGAAGATGAGGAAGATAATGATGCTGTACTGAAGGGAAATGAAAGCCCTGATGCTCAC
CGAGACAAACCTGTAACAGGGGAAAAATAGAGATATTTGCCAACAAATTGGGTGAACAATGGAACATTCTGGCTCCT

Alignment

ORF - retro_mluc_2441 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.05 %
• Parental protein coverage: 52.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSD
          FRNPV.C.EKISWKTFLKYS.EVLAVFK.YKL.DTQASRKK..ELKTGGEHVY.A.FLTSEKL..LQLSD
Retrocopy FRNPVRCCEKISWKTFLKYSDEVLAVFKNYKLGDTQASRKKTGELKTGGEHVYGATFLTSEKLLGLQLSD

Parental  SNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNT
          SNFRRHILLQYLILFQYLKGQVK.K.SN.VLTDEQSLWIE.TTKSVYQLLSENPPDGERFSKMVEHILNT
Retrocopy SNFRRHILLQYLILFQYLKGQVKSKCSNDVLTDEQSLWIEGTTKSVYQLLSENPPDGERFSKMVEHILNT

Parental  EENWNSWKNEGCPSFVKERTSDTKPTRAVRKRTAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKS
          EENWNSWKNEGCPSFVKERTSDTKPTRAVRKRTAPEDFLGKGPNKKIL.G...LT.LW.LCPDNMEACKS
Retrocopy EENWNSWKNEGCPSFVKERTSDTKPTRAVRKRTAPEDFLGKGPNKKILKGKGALTSLWDLCPDNMEACKS

Parental  DTREYMPTLEEFFEEAIEQADPESMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLEN
          ..R.YMPTLEEFFEEAIEQADPESM.ENEYK.VNN.NYGWRALRLLARRSPHFFQPT.QQFKSLPEYLEN
Retrocopy APRGYMPTLEEFFEEAIEQADPESMIENEYKVVNNPNYGWRALRLLARRSPHFFQPTKQQFKSLPEYLEN

Parental  MVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENESPDARRDKPVTGE-QIEIFANKLGEQWKILAP
          MV.KLA.E.PPPSEEIKTGE.EDEEDNDA.LK.NESPDA.RDKPVTGE..IEIFANKLGEQW.ILAP
Retrocopy MVLKLAME*PPPSEEIKTGEGEDEEDNDAVLKGNESPDAHRDKPVTGE<KIEIFANKLGEQWNILAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2441 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004090	5 retrocopies	retro_mluc_2441 , retro_mluc_2473, retro_mluc_2474, retro_mluc_2475, retro_mluc_2476,