RetrogeneDB ID: retro_mluc_2488

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430527:1709..2394(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022185
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: FAM3B
• Ensembl ID: ENSMLUG00000014543
• Aliases: None
• Description: None

Sequence

>retro_mluc_2488
GGCGCCCTGAGAGCCGTGCTCTTCACCTTCGCCTCCGTGTGCACCTGGAATGCCGGGTACCTGCTGGCACAGCTCGTCCC
AGACGCGCCCCTGTCCAGTGCCATCTACAGCGTCCGGAGCATTGGGGAGAGGCCCATCCTCAAAGCCCCGGCCCCCAAGA
GGCAAAAATGCGACCACTGGTCCCCATGCCCCCCGAACACCTATGCTTACCGGTTGCTCAGCGGCGGGGGCAGGGACAAG
TCCGCCAAAATCTGTTTGAGGACAAGCTGCTCATAGGAGAAAAGATTGGAAATGTTGGGAGAGGAATAAATCTTGCCATT
GTCAGTTATGTGACTGGGAAAGTGATAGCAGCACGGCGTTTTGATATGTATGAAGGAGGTTACTCCGGACCCATGACCAA
GTTCATTCAGGGCGCGCCTGCGAGGTCCCTGCTCTTCATGGGGACCCACGATGATGGCAGCAGCGACTGCAGGAGGACGC
CAAGAAGACCATAGAAGCGCTTGGAAGCAAAGAAATCAGGAACATGCGGCTCAGGTCCAGCTGGGTATTTCTCACAGCGA
AGGGCTTGGAACTTCCTGCAGGAATTGAGAGAGAGAAGATCAACCACTCTGATGTTGCAAAGAACAGATACCCGGGCTGG
CCTGCAGAAATACAGATGGACGGCTGTGTGCCGAAAGAGCTGAGC

Alignment

ORF - retro_mluc_2488 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.21 %
• Parental protein coverage: 98.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GALRTVLFIFACVCAWYSGYLLAQLVPEVPLSSAIYSIRSIGERPILKAPAPKRQKCDHWSPCPPNTYAY
          GALR.VLF.FA.VC.W..GYLLAQLVP..PLSSAIYS.RSIGERPILKAPAPKRQKCDHWSPCPPNTYAY
Retrocopy GALRAVLFTFASVCTWNAGYLLAQLVPDAPLSSAIYSVRSIGERPILKAPAPKRQKCDHWSPCPPNTYAY

Parental  RLLSGGGRDKYAKIC-FEDELLIWGDLYGTAGGLINIAIVNYVTGKVIAARYFDMYEGDYSGPMTKFIQG
          RLLSGGGRDK.AKIC.FED.LLI.G...G..G..IN.AIV.YVTGKVIAAR.FDMYEG.YSGPMTKFIQG
Retrocopy RLLSGGGRDKSAKIC<FEDKLLI-GEKIGNVGRGINLAIVSYVTGKVIAARRFDMYEGGYSGPMTKFIQG

Parental  APAKSLLFMVTHDDGSS-RLKEDAKKTIEALGSKEIRNMRFRSSWVFLTAKGFELPAGIEREKINHSDAA
          APA.SLLFM.THDDGSS.RL.EDAKKTIEALGSKEIRNMR.RSSWVFLTAKG.ELPAGIEREKINHSD.A
Retrocopy APARSLLFMGTHDDGSS<RLQEDAKKTIEALGSKEIRNMRLRSSWVFLTAKGLELPAGIEREKINHSDVA

Parental  KNRYPGWPAEIQIDGCVPKELS
          KNRYPGWPAEIQ.DGCVPKELS
Retrocopy KNRYPGWPAEIQMDGCVPKELS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2488 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000001496	1 retrocopy	retro_acar_127,
Myotis lucifugus	ENSMLUG00000014543	1 retrocopy	retro_mluc_2488 ,