RetrogeneDB ID: retro_mluc_2510

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430639:191669..192223(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RABL5
• Ensembl ID: ENSMLUG00000012634
• Aliases: None
• Description: None

Sequence

>retro_mluc_2510
TTGCTTAAGTCCTGGGTCCTTTGTGTGGGGCCCTGCCAGAGTGGAAAACTGTTTTGGCCAACTTCCTGACAGAATATTCT
GGCATCACTGACTATAACCCAACCCAAGAAGGGGGAATCCTGGAACTTGAGAACCCACATGTTACCAGCAACAGCAAAGG
CACAAGGTGAGAATTTGAGCTATGGGAGTGTGGCGGCAACCCAAAGTTTGAGTCTTGCTGGTCAGCGCTGATGCAGGACT
CTCAAGAGTGGTGATCATCTTCAATGCTGACATCCCAAGTCAGCTGAAGGAAATCCAGATGTGGTATGCCTGCTTTGCTC
AGCAGCAGTTCTTATAAACTCAGTTCTCAATGTCTGTTAATTATACACCACAAACCAGGCTCTGGCAGGGATGAAGAAAA
CCTGTCTTTGTCGCCACCCTTGAACAAGCTAAAGCTGGTGCACTGGAATCTTGAGGGTGACCCTGAAGAGATCCAGATGG
AATTCATAAAGTATTTAAAAAGCATAATCAACTCAATGTCTGAGAGCAGAGACGGGGAGATGTCAATTATTACC

Alignment

ORF - retro_mluc_2510 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.66 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MLKAKILFVGPCESGK-TVLANFLTESSDITEYNPTQGVRILEFENPHVTSNNKGTACEFELWDCGGDPK
          .LK...L.VGPC.SGK.TVLANFLTE.S.IT.YNPTQ...ILE.ENPHVTSN.KGT..EFELW.CGG.PK
Retrocopy LLKSWVLCVGPCQSGK<TVLANFLTEYSGITDYNPTQEGGILELENPHVTSNSKGTR*EFELWECGGNPK

Parental  FESCWPALMKDSHG-VVIIFNADIPSHLKEIEMWYSCFV-QQ-QFLQDTQCLLIAHHKPGSGSDKGNLSL
          FESCW.ALM.DS...VVIIFNADIPS.LKEI.MWY.CF..QQ.......QCLLI.HHKPGSG.D..NLSL
Retrocopy FESCWSALMQDSQE<VVIIFNADIPSQLKEIQMWYACFAQQQ>SYKLSSQCLLIIHHKPGSGRDEENLSL

Parental  SPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSVSESRDREEMSIIT
          SPPLNKLKLVH.NLE.DPEEI.MEFIKYLKSIINS.SESRD..EMSIIT
Retrocopy SPPLNKLKLVHWNLEGDPEEIQMEFIKYLKSIINSMSESRD-GEMSIIT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2510 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014343	1 retrocopy	retro_btau_1408,
Choloepus hoffmanni	ENSCHOG00000012225	1 retrocopy	retro_chof_409,
Macropus eugenii	ENSMEUG00000006225	1 retrocopy	retro_meug_331,
Myotis lucifugus	ENSMLUG00000012634	1 retrocopy	retro_mluc_2510 ,
Oryctolagus cuniculus	ENSOCUG00000007709	1 retrocopy	retro_ocun_522,
Tursiops truncatus	ENSTTRG00000005871	1 retrocopy	retro_ttru_110,