RetrogeneDB ID: retro_mluc_2534

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430773:20963..21485(+)
• Located in intron of: ENSMLUG00000008229

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MYL9
• Ensembl ID: ENSMLUG00000000207
• Aliases: None
• Description: None

Sequence

>retro_mluc_2534
GAAGCCAAGATGTCTAGTAAGCGAGCCAAGGTCAAGACCACCAAGAAGCGGCCACAGCAGGCCACATCCAGTGTCTTTGC
GATGTTTGACCAGTCCCAGACCCAGGAGTTTAAGGAGGCCTTCAACGTGATCAACCAGAACCGAGATGGCCTCATTGACA
AGGAGGACTTGCATGACCTGCTGGCCTCCCTGGGGAAGAACCCCACGGATGAGTACTTGGAGGGCATGATGAGCAAGGCC
CCTGGACCCATCAACTTCACCATGTTCCTGACCGTGTTTGGGGAGAAGCTGAATGGCACGGACCCCGAGGACGTGATCCA
CAATGCCTTTGCCTGCTTCGACGAAGAGGCCTCAGGTTTTATCCATGAGGACCATCTTCGGGAGCTGCTCACCACCATGG
GTGACCGCTTCACAGATGAGGAAGTGGACGAGATGTATCACGAGGCTCCCATTGTCAAGAAAGGCAACTTCAACTACGTG
GAGTTCACCCGCATCCTCAAACACGGTGCCAAGGACAAAGAC

Alignment

ORF - retro_mluc_2534 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.53 %
• Parental protein coverage: 99.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EAKMSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTD
          EAKMSSKRAK.KTTKKRPQ.ATS.VFAMFDQSQ.QEFKEAFN.I.QNRDG.IDKEDLHD.LASLGKNPTD
Retrocopy EAKMSSKRAKVKTTKKRPQQATSSVFAMFDQSQTQEFKEAFNVINQNRDGLIDKEDLHDLLASLGKNPTD

Parental  EYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE
          EYLEGMMS.APGPINFTMFLT.FGEKLNGTDPEDVI.NAFACFDEEASGFIHEDHLRELLTTMGDRFTDE
Retrocopy EYLEGMMSKAPGPINFTMFLTVFGEKLNGTDPEDVIHNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE

Parental  EVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKD
          EVDEMY.EAPI.KKGNFNYVEFTRILKHGAKDKD
Retrocopy EVDEMYHEAPIVKKGNFNYVEFTRILKHGAKDKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2534 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008540	3 retrocopies	retro_cfam_1384, retro_cfam_2066, retro_cfam_2071,
Callithrix jacchus	ENSCJAG00000012890	4 retrocopies	retro_cjac_3193, retro_cjac_3195, retro_cjac_3743, retro_cjac_637,
Equus caballus	ENSECAG00000007545	1 retrocopy	retro_ecab_923,
Homo sapiens	ENSG00000101335	1 retrocopy	retro_hsap_956,
Gorilla gorilla	ENSGGOG00000024477	1 retrocopy	retro_ggor_770,
Myotis lucifugus	ENSMLUG00000000207	2 retrocopies	retro_mluc_2534 , retro_mluc_327,
Myotis lucifugus	ENSMLUG00000005189	2 retrocopies	retro_mluc_706, retro_mluc_947,
Nomascus leucogenys	ENSNLEG00000006109	1 retrocopy	retro_nleu_2460,
Pongo abelii	ENSPPYG00000010971	1 retrocopy	retro_pabe_972,
Pan troglodytes	ENSPTRG00000013458	1 retrocopy	retro_ptro_662,