RetrogeneDB ID: retro_mluc_2538

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430799:31320..32159(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GOT1
• Ensembl ID: ENSMLUG00000007333
• Aliases: None
• Description: Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:G1P919]

Sequence

>retro_mluc_2538
CCCCTGTGCATTCTGCCACAACACTGGGAGAATCACAATGCTGTGTTTACTGCCACTGCATTTAAAGACATTGGGTCCTA
TCACTATTGGGATGCAGCAAAGAGAGGACTCGACCTCCAGGGTTTTCTGAAGGATGTGGAGAATGCTCCTGAGTGTTCCA
TCTTTGTCCTCCATGCCTGTGCACACAACCCACTGGAACCGACCCAACTCCAGAGCAGTGGAGGGAGATCACCTCAGTCA
TAAAGTGCCCGTTTCTGTTTCCTTTCTTTGACTCAGCCTATCAGGGCTTCACATCTGGAAACCTAGAGAAAGATGCCTGG
GCCATTTTCTATTTTGTGTCTGAAGGATTTGAGCTCTTCTGTGCCCAGTCCTTCTCCAAAATTTTTGGGCTCTACAATGA
GCACATAGGGAATGTGATCATAGTTGCAAAAGAATCTGACAGCATGCAGCAGGCTCTTTCTCACATAAATAATGTGCAAA
TTACCTTGTCTAATATCCCTGCTCAGGGAGTGTGGATCATGGTCACTACCCTCTCTAACCCTGAGCTCCTTAAGGAATGG
ACAGGTAATATGAAGACAATGGCTGTCCAGATTCTGACCATGAGATCTGAACTATGGGCACAATTATAAGCCCTCCAGCC
CCCTGGAACCTGGAACCATATCACCGAGTAAATTGAAATGATCAGCTTCACGGGGTTGAAGACCAAGCAGGTTGACTATA
TGGTCAGTGAAAAGCACATCTATCTGCTGCCAAGTGATCTAATCAATATGTGTGACTTGACCACCAAAAACCTAGATTAT
GTGGCCACCTTCATCCATGACACAGTCACCAAAATCCAG

Alignment

ORF - retro_mluc_2538 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.89 %
• Parental protein coverage: 68.04 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PIYVSSPTWENHNAVFTAAGFKDIRSYHYWDATKRGLDLRGFLNDLENAPEFSIFVLHACAHNP-TGTDP
          P.......WENHNAVFTA..FKDI.SYHYWDA.KRGLDL.GFL.D.ENAPE.SIFVLHACAHNP.TGTDP
Retrocopy PLCILPQHWENHNAVFTATAFKDIGSYHYWDAAKRGLDLQGFLKDVENAPECSIFVLHACAHNP<TGTDP

Parental  TPEQWKEIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNL
          TPEQW.EI.SV.K..FLFPFFDSAYQGF.SGNLEKDAWAI.YFVSEGFELFCAQSFSK.FGLYNE..GN.
Retrocopy TPEQWREITSVIKCPFLFPFFDSAYQGFTSGNLEKDAWAIFYFVSEGFELFCAQSFSKIFGLYNEHIGNV

Parental  TVVAKEPDSMQRVLSQMEKIVRITWSNPPAQGARIVATTLSNPDLFKEWKGNVKTMADRILTMRSELRAR
          ..VAKE.DSMQ..LS.....V.IT.SN.PAQG..I..TTLSNP.L.KEW.GN.KTMA..ILTMRSEL.A.
Retrocopy IIVAKESDSMQQALSHINN-VQITLSNIPAQGVWIMVTTLSNPELLKEWTGNMKTMAVQILTMRSELWAQ

Parental  LEALKTPGTWNHITEQIGMFSFTGLNTKQVEYLVSEKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTK
          L.AL..PGTWNHITE.I.M.SFTGL.TKQV.Y.VSEKHIYLLPS..INMC.LTTKNLDYVAT.IH..VTK
Retrocopy L*ALQPPGTWNHITE*IEMISFTGLKTKQVDYMVSEKHIYLLPSDLINMCDLTTKNLDYVATFIHDTVTK

Parental  IK
          I.
Retrocopy IQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2538 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007333	1 retrocopy	retro_mluc_2538 ,
Mustela putorius furo	ENSMPUG00000016996	1 retrocopy	retro_mputfur_861,
Pteropus vampyrus	ENSPVAG00000008890	1 retrocopy	retro_pvam_418,