RetrogeneDB ID: retro_mluc_2585

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431162:21595..23962(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TAF2
• Ensembl ID: ENSMLUG00000009579
• Aliases: None
• Description: None

Sequence

>retro_mluc_2585
ATGCTGCCCACTGGCTTGGAGCCCGCCAGAATGAACAGGAAGAAAGGAGACAAGGGCTTTGAAAGTCCAAGGCCGTACAA
ATTAACCCATCAGGTCGTCTGCATCAACAACATAAACTTCCAAAGAAAATCTGTTGTGGGATTTGTGGAACTGACTATAT
TTCCCACAGTTGCAAACTTGAATAGAATCAAGTTGAACAGCAAGCAGTGTAGAATATACCGAGTAAGAATCAATGATTTA
GAAGCTGCTTTTATTTATAATGATCCGACATTGGAAGTTTGTCACAATGAATCACAACAAAGAAGTCTCAATTATTTTTC
CAATGCTTATGCAGCTGCACTGAGTGCTGTGGATCCTGATGCAGGAAATGGAGAACTTTGCATTAAGGTTCCATCAGAGT
TATGGAAACACGTTGATGAATTAAAGGTCCTAAAGATACACATCAGTTTTTCTTTGGATCAGCCAAAAGGAGGTCTTCAT
TTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGAGAGGTGCTCATGTTTTCTCTTGTGGATATCAGAATTCCACAAG
ATTTTGGTTCCCATGTGTTGACTCATACTCTGAATTATGTACATGGAAATTAGAATTTACAGTAGATGCTGCGATGGTGG
CTGTTTCCAATGGCGATTTGGTGGAGACAGTGTATACCCATGATATGAGGAAGAAGACCTTCCATTACATGCTTACCATT
CCAACAGCTGCGTCAAATATCGCCTTGGCCATTGGACCTTTTGAAACACTTGTAGATCCATATATGCATGAGGTTACTCA
TTTTTGTTTACCCCAACTTCTTCCATTGCTTAAACATACCACATCATATCTTCATGAAGTTTTTGAATTTTATGAAGAAA
TTCTTACATGTCGATACCCATACTCCTGCTTTAAGACTGTATTCATCGATGAGGCTTATGTTGAAGTGGCTGCTTATGCT
TCCATGAGCATTTTTAGCACAAATCTATTGCACAGTGCCAGGATTATTGATGAGACACCTTTGACTAGAAGGTGTTTAGC
CCAGTCCTTGGCCCAGCAGTTTTTTGGATGTTTCATATCCAGAATGTCTTGGTCTGGTGAATGGGTACTGAAGGGAATTT
CAGGCTATATTTATGGACTTTGGATGAAAAAAACTTTTGGAGTGAATGAATACCGCCATTGGATTAAAGAAGAGCTGGAC
AAAATTGTGGCATATGAGATGAAAACTGGTGGAGTTTTACTACATCCCATATTTGGTGGAGGAAAAGAGAAGGATAATCC
AGCATCCCATCTATACTTTTCAATAAAGCATCCACATACGCTGTCCTGGGAGTACGACAGTGTGTTCCAGTGAAAAGCTC
ACCTTGTGATGAGATTGATTGAAAACAGGATCAGTATGGAATTTATGCTACAAGTTTTCAATAAACTGCTAAGTTTGGCT
AGTACTGCTTCATCTCAGAAGTTCCAGTCCCATATGTGGAGTCAAATGTTGGTCTCCACATTTGGGTTTTTGAAATCCAT
CTCGAATGTCTCTGGCAAAGACATTCAGCCTTTAATAAAGCAGTGGGTAGACCGGAGTGGAGTGGTAAAATTTTATGGAA
GTTTTGCATTTAATAGAAAATGAAATGTCTTGGAATTGGAAATAAAACAAGATTATACATCACCTGGAACTCAGAAATAT
GTGGGATCGCTTAAAGTGACAGTGCAGGAATTAGATGGATCCTTCAATCATACATTGCAAATTGAAGAAAACAGCCTTAA
ACATGATATACCTTGCCATTCCAAAAGCAGAAGGAATAATAATAAGAAAATTCTACTGATGAATGGAGAGGAAGTTGATA
TGGATCTTTCTGCAATGGATGCTGATTCCCCTTCGCTGTGGATAAGGATAGACCCCGATATGTCAGTCCTGAGGAAAGTA
GAATTTGAGCAAGCAGATTTCATGTGGCAGTACCAGCTCTGCTACGAGAGGGATGTGGTTGCACAGCAAGAGACCATCTT
GGCCTTGGAAAAGTTGCCCACACCAGCATCGCGGCTTGCCCTCACTGACATTCTAGAGCAAGAGCAGTGTTTCTACCAAG
TAAGAATGTCAGTTTGCTTCTGCCTTGCAAAGATTGCAAATTCAATGGTGAGCACGTGGACAGGACCACCAGCCATGAAG
TCACTCTTTACTAGAATGTGGTGTTGTAAAACTTGTCCAAACATTGTGAAAACAAACAACTCTATGAACTTTCAAAGTTA
TTTTCTACAAAAGACTATGCCAGTTGCACTGGCTCTATTGAGAGATGTTCACAACCTTTGTCCCAAAGAAGTCTTAACAT
TTATTTTAGACTTAATCAAGTACAATGACAACAGAAAAAATGTTTTC

Alignment

ORF - retro_mluc_2585 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.07 %
• Parental protein coverage: 65.86 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPPTGLEPARMNRKKGDKGFESPRPYKTTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQC
          M.PTGLEPARMNRKKGDKGFESPRPYK.THQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQC
Retrocopy MLPTGLEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQC

Parental  RIYRVRINDLEAAFIYNDPTLEVCHNESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDE
          RIYRVRINDLEAAFIYNDPTLEVCHNES.QR.LNYFSNAYAAA.SAVDPDAGNGELCIKVPSELWKHVDE
Retrocopy RIYRVRINDLEAAFIYNDPTLEVCHNESQQRSLNYFSNAYAAALSAVDPDAGNGELCIKVPSELWKHVDE

Parental  LKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDA
          LKVLKIHI.FSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDA
Retrocopy LKVLKIHISFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDA

Parental  AMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNIALAIGPFEILVDPYMHEVTHFCLPQLLPLLKHT
          AMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNIALAIGPFE.LVDPYMHEVTHFCLPQLLPLLKHT
Retrocopy AMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNIALAIGPFETLVDPYMHEVTHFCLPQLLPLLKHT

Parental  TSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSL
          TSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSA.IIDETPLTRRCLAQSL
Retrocopy TSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSARIIDETPLTRRCLAQSL

Parental  AQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGG
          AQQFFGCFISRMSWS.EWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYE.KTGGVLLHPIFGG
Retrocopy AQQFFGCFISRMSWSGEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYEMKTGGVLLHPIFGG

Parental  GKEKDNPASHLYFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQS
          GKEKDNPASHLYFSIKHPHTLSWEY...FQ.KAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQS
Retrocopy GKEKDNPASHLYFSIKHPHTLSWEYDSVFQ*KAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQS

Parental  HMWSQMLVSTFGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKY
          HMWSQMLVSTFGFLKSISNVSGKDIQPLIKQWVD.SGVVKFYGSFAFNRK.NVLELEIKQDYTSPGTQKY
Retrocopy HMWSQMLVSTFGFLKSISNVSGKDIQPLIKQWVDRSGVVKFYGSFAFNRK*NVLELEIKQDYTSPGTQKY

Parental  VGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRI
          VG.LKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRN..KKI.LMNGEEVDMDLSAMDADSP.LWIRI
Retrocopy VGSLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNNNKKILLMNGEEVDMDLSAMDADSPSLWIRI

Parental  DPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACF
          DPDMSVLRKVEFEQADFMWQYQL.YERDVVAQQE.ILALEK.PTPASRLALTDILEQEQCFY.VRMS.CF
Retrocopy DPDMSVLRKVEFEQADFMWQYQLCYERDVVAQQETILALEKLPTPASRLALTDILEQEQCFYQVRMSVCF

Parental  CLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKE
          CLAKIANSMVSTWTGPPAMKSLFTRM.CCKTCPNIVKTNN.M.FQSYFLQKTMPVA.ALLRDVHNLCPKE
Retrocopy CLAKIANSMVSTWTGPPAMKSLFTRMWCCKTCPNIVKTNNSMNFQSYFLQKTMPVALALLRDVHNLCPKE

Parental  VLTFILDLIKYNDNRKNKF
          VLTFILDLIKYNDNRKN.F
Retrocopy VLTFILDLIKYNDNRKNVF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2585 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000009579	1 retrocopy	retro_mluc_2585 ,