RetrogeneDB ID: retro_mluc_2599

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431430:21470..24160(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022789
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: THOC2
• Ensembl ID: ENSMLUG00000013656
• Aliases: None
• Description: None

Sequence

>retro_mluc_2599
TTGGACTTATGTTGGCTTCTCAGCGAAAACAAGAGCCACGGCAGTTCCACTTACAGAGATTTCCAGCAAGCTCTCTATGA
GTTATCACACCATGTCATTCAAGGAAATCTGAAGCCCGAACAAGCAGCTGATGTTTTCAATGACATCAGCGAATTTCATG
AGGATGTGCCTTCCATTCTTGTTGATGTCTTTTGCATGTTAGATGTTGAGACAACCGTTTTAGAAGGGAAGAGCAAGAGA
GACTGTTTTACACAATTGGTATCAGCGTCTTCGTATTTCATTTCAGACACGATTCTAAAGGAACTCCTGGATCCAGAAAC
ATTGGAATCATTAGGACTTATCAAACAATCATGGCAATTCCATCAAACATCAGTGAAAATCAAGACAAAACTCTTTTATA
CGCAGCAAAAGTTCAACTTGTTAAGAGAAGAGAATGAAGGCTATGCTAAGCTGATTGTTGAATTGAGGCAAGATTTATCG
GGAAATATGACTGGTGATTTAATCTTACAAAATATCAAATCCTTAATAGGATGCTTTCATCTAGATCCCAATAGAGTTTT
GGGTGTCATTTTAGAAGTGTTTGAATGCAGACCAGAATGTGATAACTTTTTTATATCTTTATTAGAATCTTGTGTGAATA
TGTGTGAGCCGCAAACATTTTGTCATATACTTGGGTTCAAATTCAAGTGTTACCAGGAGCCGAATGGACAGACTCCTTCA
TCTTTATACAGAGTTGCAGCAGTGCTCCTACAAGGTAATCTTATTGATTTAAATGATCTCTATGTACATCTTCTTCCAGC
TGATAATTGCATGATGGATGAATATAAACGAGAAATGGTGGAAGCTAAGGCCATTCTTCGAAAACTTACGGTGGATTTAT
TGACTTCTGAAAAAATGGATAAGCAAGATAAGGCAAAGGAAGAGGAGGAGGAGACAGTAGAAAAGCCACCTGACAACCAA
AAACTTGGTTCGTTAGAAGCCTTATTAAAGATTGGCGATTGGCAGCATGCGCAGAACATGATGGATCGAATGCCTCCATA
CTATGCTGCTTCCCACAAGCTGATAGCTCTTGCTATTTGCAAGCTTATTCACATAACTATTGAGCCTCTCTACTGAAGAG
TTGGCATTCCTAAAGGTACTGAAGGCTCACCTGTTCGTGCTTTGCAAAATAAGAGAGCGCTAAAACAAGCAGGGAGCTTT
GAGGATTTGAGGACAGATGCCTTCAATATGTTCTGTTACCTCGGTCCCCACCTTTCTTGGGATCCCATTTTATTTGCAAA
AGTGGTGCACATAGGCCAATCCTTTATGAAGGAGCTTCAGTCTGATGGAAGAAACAAGAGGTTCAAGAGAAAGTGGACGT
TATTCTTAGCTGTTTACTTGGCATTACTGACCAGGCCCTACTTTCATCTCTTTCTCTAATGGACTGCAATGCTTGTATGA
CTGAGGAACTATGGGGAATGTTAAAAACATTTCCATATCAGCATAGATATCATCTGTATGGCCAGTGGAAGAATGAAACT
TACAACAGGTCCCTACTTTTAGTAAAAGTTAAAGCTCTAACAATAGACCAAGCTAGAGATATCATGAACCATCTCACCAA
GGAAAATGTGAGGCCTTCTGGAAGACAAATTGGGAAATTGAGCCACAGCAATCCAACTATTCTGTTTGATTATATCTTGG
CAAAAATACAGATGTGTGATGAGTTGATGGCACCTGTAGTAGATTCACTGGAATGCCTCACCTCATTGAATTGAGATGTC
TTGGCCTATTGTATCATCGAGGCTTCAGCAAATCCAGAAAAGGGAAGGATGACACACGACGATACAACCAGTTCAAGCTG
GCTTTGGCCTCTTGTTAGTTTCTGTGCTGCAGTCTTTCCTAAATATCCAATGGATCTGGCTGGTCTTCTGCAATATGTGG
CTCATCAGCTCAAGGCAGGCAGAAGTATTGGCCTGCTCATATTGCAAGAAGTGGTACATAAAATGGCAGGAATAGAAATC
ACCGGGGAAGAGACGATGACAACGGAGCAACTAGAGGCCATGACTGGCGGAGAGCAACTGAGAGCTGAGGGAGGTTCTTG
TGGCCAGACCAGAAACACTAAAAAATCCTCCCAGAGATTAAAGGATGCCCTATTGGACTATGACCTTGCTCTTCCCCTTG
TTTTGATGATAGCTCAGCAGGGGGATAGGGTGATCTTACAGGAAGGTAGAGAGAAAGATGTGGAACTAGAGGGAAAGCTC
TATGACCAGTGTCATGATACCTTGGTACAGTTTGGTGGATTTTTAGCATTGAATCTAAGCACAGAAGAGTACACAAAGAG
AGTGCTTTCGATTGATGTGCTCTATCACGAATTTCATATACCCCATGATGCAGCATTTTTCTTGTCTAGGCCAACGTATG
CACGCCATATCTCATCCAAATGTGATGAACTTAAAAGATCAGACAAGGGAAGTAAACAGCAACATAAAGTCCACAAGTAC
ATAGCATCATGTGAAATGGTGATGGTGCCTGTCCGTGAAGCGGTAGTCTCATTGTCCGTTTCCAATGTCTGGGATGACAT
CAGCCCTCGATTCTATGCCACATTCTGGTCACTGACAACGTATGACCTTGCAGTTCCACACACCAGCTATGAATGGGAAG
TCAGTAAACTTAAAGTCCAGATGAAAGCACTGGATGACAATTAAGAAATG

Alignment

ORF - retro_mluc_2599 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.04 %
• Parental protein coverage: 57.15 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LHLCRILSENKSHDSSTYRDFQQVLYELSYHVIKGNLKHEQASNVFNDISEFREDLPSILADVFCILDIE
          L.LC..LSENKSH.SSTYRDFQQ.LYELS.HVI.GNLK.EQA..VFNDISEF.ED.PSIL.DVFC.LD.E
Retrocopy LDLCWLLSENKSHGSSTYRDFQQALYELSHHVIQGNLKPEQAADVFNDISEFHEDVPSILVDVFCMLDVE

Parental  TNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNL
          T..LE.KSKRD.FTQLV.A..Y..SDT.LKE.LDPETLESLGLIKQS.QF.Q.SVKIKTKLFY.QQKFNL
Retrocopy TTVLEGKSKRDCFTQLVSASSYFISDTILKELLDPETLESLGLIKQSWQFHQTSVKIKTKLFYTQQKFNL

Parental  LREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLES
          LREENEGYAKLI.EL.QDLSGN.T.DLIL.NIKSLIGCF.LDPNRVL.VILEVFECRPE.D.FFISLLES
Retrocopy LREENEGYAKLIVELRQDLSGNMTGDLILQNIKSLIGCFHLDPNRVLGVILEVFECRPECDNFFISLLES

Parental  YMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQVNLIDLDDLYVHLLPADNCIMDEHKREIV
          ...MCEPQT.CHILGFKFK.YQEP.G.TPSSLYRVAAVLLQ.NLIDL.DLYVHLLPADNC.MDE.KRE.V
Retrocopy CVNMCEPQTFCHILGFKFKCYQEPNGQTPSSLYRVAAVLLQGNLIDLNDLYVHLLPADNCMMDEYKREMV

Parental  EAKQIVRKLTMVVLSSEKMDEREKEKEKEDDKVEKPPDNQKLGLLEALLKIGDWQHAQNIMDQMPPYYAA
          EAK.I.RKLT...L.SEKMD...K.KE.E...VEKPPDNQKLG.LEALLKIGDWQHAQN.MD.MPPYYAA
Retrocopy EAKAILRKLTVDLLTSEKMDKQDKAKEEEEETVEKPPDNQKLGSLEALLKIGDWQHAQNMMDRMPPYYAA

Parental  SHKLIALAICKLIHITIEPLYRRVGVPKGAKGSPVNALQNKRAPKQAESFEDLRRDVFNMFCYLGPHLSH
          SHKLIALAICKLIHITIEPLY.RVG.PKG..GSPV.ALQNKRA.KQA.SFEDLR.D.FNMFCYLGPHLS.
Retrocopy SHKLIALAICKLIHITIEPLY*RVGIPKGTEGSPVRALQNKRALKQAGSFEDLRTDAFNMFCYLGPHLSW

Parental  DPILFAKVVRIGKSFMKEFQSDG-SKQEDKEKTEVILSCLLSITDQVLLPSLSLMDCNACMSEELWGMFK
          DPILFAKVV.IG.SFMKE.QSDG..KQE..EK..VILSCLL.ITDQ.LL.SLSLMDCNACM.EELWGM.K
Retrocopy DPILFAKVVHIGQSFMKELQSDG<KKQEVQEKVDVILSCLLGITDQALLSSLSLMDCNACMTEELWGMLK

Parental  TFPYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYI
          TFPYQHRY.LYGQWKNETYN...LLVKVKA.TID.A..IM..LTKENV.PSGRQIGKLSHSNPTILFDYI
Retrocopy TFPYQHRYHLYGQWKNETYNRSLLLVKVKALTIDQARDIMNHLTKENVRPSGRQIGKLSHSNPTILFDYI

Parental  LSQIQKYDNLITPVVDSLKYLTSLNYDVLACILLNCIIEALANPEKERMKHDDTTISSWLQSLASFCGAV
          L..IQ..D.L..PVVDSL..LTSLN.DVLA........EA.ANPEK.RM.HDDTT.SSWL..L.SFC.AV
Retrocopy LAKIQMCDELMAPVVDSLECLTSLN*DVLAYCII----EASANPEKGRMTHDDTTSSSWLWPLVSFCAAV

Parental  FRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEIT--EEMTMEQLEAMTGGEQLKAEGGYFG
          F.KYP.DLAGLLQYVA.QLKAG.S..LLIL.EVV.KMAGIEIT..E.MT.EQLEAMTGGEQL.AEGG..G
Retrocopy FPKYPMDLAGLLQYVAHQLKAGRSIGLLILQEVVHKMAGIEITGEETMTTEQLEAMTGGEQLRAEGGSCG

Parental  QIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
          Q.RNTKKSSQRLKDALLD.DLALPL.L..AQQ...VI.QEG.EK...L.GKLYDQCHDTLVQFGGFLA.N
Retrocopy QTRNTKKSSQRLKDALLDYDLALPLVLMIAQQGDRVILQEGREKDVELEGKLYDQCHDTLVQFGGFLALN

Parental  LSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGSKQQHKVHKYITSCEMVM
          LSTE.Y.KRV.SIDVL..EFH.PHDAAFFLSRP.YA.HISSK.DELK.S.KGSKQQHKVHKYI.SCEMVM
Retrocopy LSTEEYTKRVLSIDVLYHEFHIPHDAAFFLSRPTYARHISSKCDELKRSDKGSKQQHKVHKYIASCEMVM

Parental  APVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVSKLKVQMKAIDDNQEM
          .PV.EAVVSL.VS.VWDDISP.FYATFWSLT.YDLAVPHTSYE.EVSKLKVQMKA.DDN.EM
Retrocopy VPVREAVVSLSVSNVWDDISPRFYATFWSLTTYDLAVPHTSYEWEVSKLKVQMKALDDN*EM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2599 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013656	4 retrocopies	retro_mluc_2531, retro_mluc_2546, retro_mluc_2599 , retro_mluc_2606,
Mus musculus	ENSMUSG00000037475	1 retrocopy	retro_mmus_172,
Rattus norvegicus	ENSRNOG00000007315	1 retrocopy	retro_rnor_89,