RetrogeneDB ID: retro_mluc_2621

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL432165:18813..19737(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC7A3
• Ensembl ID: ENSMLUG00000023615
• Aliases: None
• Description: None

Sequence

>retro_mluc_2621
ACCTGTTTCTATGCATTTGTTGGTTTTGACTATATTGCTACCACTGCGGAGGAGGCTCAGAATCCCCAGTGTCCCATCCC
CATGGGCACTGTGATTTCACTGTTTGTCTGCTTTTTGGAGTATTTTGGTATTTCTTCGGCACTCATGCTAATGATGCCTT
ACTACCAGCTTCACACTGAGCGTACCTTGCCTGAGGCATTTCTCCGTGTTGGATGGGCCCCTTCCCTCTATGTTATGGCT
ATTGGATCCCTCTGCGCTCTTTCTACTAGCCTCTTGGGCTCTATGTCCCTCATGCCTTAGGTGATCTATGCAATGGTGAA
GAATGGCCTTGCTGTTCCGTGTCCTTGCCTGGATCCACAATGGCGCACACACCCCATCGCAGGCACTGTGGTCTCTGGTT
TTATTGCAACATTAATGGCATTCCTCTTGGAACTCACAGATCTTGGGGACCTCATGTCAATTGGGACCCTGATTGCCTAC
CCTATTTGGGTGCTCATATTCAGGTATTGGCCTGGCCAGGAGAGAAAGACTGAGGAAGGTGAACAGGAGTTGCAGGAGGA
GAGGATGCCTGAAACAGAAAAGCTGACCTCACAGGCACCGTTTTATCCACACAACTCCACCCCCACTCCACTCTCTGGCC
CAGATGCCTATGTTGGCTCCTCACTGCTTGCTCTGCTCCAGAGTGTCCTTTGCCTGGTGCTGGCCCAATGGTCAATGCCA
CTGCTTTCTGGAGATCCAGTGTGTACTGCAGGGGTTGTGCTACTCCTGATGCTGGTTACTGGGGTCACTGGGTCATCTGG
AGATAGCCACAGAGCTCCACATCCCTTCACTTTAAGGCTCCCTGCTTTGCCTCTCCTCCCACTAATGAGCATCATTGTGA
ATGTTTATCTGATGATGCAGCTGAAAGCTGGTAATTGGGCCCGG

Alignment

ORF - retro_mluc_2621 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.7 %
• Parental protein coverage: 50.08 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  TCFYAFVGFDCIATTGEEAQNPQRSIPMGIVISLFI-FLASFAVSSALTLMM-YYQLHSESPLPEAFLHV
          TCFYAFVGFD.IATT.EEAQNPQ..IPMG.VISLF..FL..F..SSAL.LMM.YYQLH.E..LPEAFL.V
Retrocopy TCFYAFVGFDYIATTAEEAQNPQCPIPMGTVISLFVCFLEYFGISSALMLMMPYYQLHTERTLPEAFLRV

Parental  GCAPPRYVVAIGSLCALLPGLLGSMFPMPRVIYAMAEDGL-LFRVLARIHSGTRTP-IVATVVSGIIAAL
          G.AP..YV.AIGSLCAL...LLGSM..MP.VIYAM...GL.LFRVLA.IH.G..TP.I..TVVSG.IA.L
Retrocopy GWAPSLYVMAIGSLCALSTSLLGSMSLMP*VIYAMVKNGL>LFRVLAWIHNGAHTP<IAGTVVSGFIATL

Parental  MAFLFELADLVDLMSIGTLLAYSLVSICVLILRYQPGQEMRIEEDELALQEETMPEIEKLTLQALFCPHN
          MAFL.EL.DL.DLMSIGTL.AY....I.VLI.RY.PGQE...EE.E..LQEE.MPE.EKLT.QA.F.PHN
Retrocopy MAFLLELTDLGDLMSIGTLIAYP---IWVLIFRYWPGQERKTEEGEQELQEERMPETEKLTSQAPFYPHN

Parental  LSPTPLSGQVVYVCSSLLALLLSVLCLVLAQWSIPLLSGDPVWIAVVVLLLMLITGFTG-VIWRQPQSSA
          ..PTPLSG...YV.SSLLALL.SVLCLVLAQWS.PLLSGDPV..A.VVLLLML.TG.TG.VIWR.PQSS.
Retrocopy STPTPLSGPDAYVGSSLLALLQSVLCLVLAQWSMPLLSGDPVCTAGVVLLLMLVTGVTG<VIWR*PQSST

Parental  PLHFK-VPALPLLPLMSIFVNVYLMMQMTSGTWAR
          .LHFK..PALPLLPLMSI.VNVYLMMQ...G.WAR
Retrocopy SLHFK>LPALPLLPLMSIIVNVYLMMQLKAGNWAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2621 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016908	2 retrocopies	retro_cfam_130, retro_cfam_156,
Myotis lucifugus	ENSMLUG00000023615	1 retrocopy	retro_mluc_2621 ,
Mustela putorius furo	ENSMPUG00000004592	1 retrocopy	retro_mputfur_24,