RetrogeneDB ID: retro_mluc_300

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429866:2076036..2076990(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024642
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RNF41
• Ensembl ID: ENSMLUG00000006057
• Aliases: None
• Description: None

Sequence

>retro_mluc_300
ATGGGGTATGACGTAACCCGCTTCCAGGGGGATGTGGACGAAGACCTGATCTGTCCTATCTGCAGCGGAGTCCTGGAGGA
GCCCGTGCAGGCCCCGCGCTGTGAGCATGCCTTCTGCAACGCGTGCATCACCCAATGGTTCTCTCAGCAGCACACGTGTC
CGGTGGACCGCAGCGTCGTGACGGCTGCCGACCTGAGCCCGGTACCTCGGATCCTGCAGAACATGCTGTCCAAGCTGCAG
ATCACCTGCGACAACGCGGTCTTTGGCTGCAGTGCTGTGGTCCGGCTTGACAACCTCCGGTCTCACCTCAGCGACTGCGA
GCACAACCCAAGGCGGCCTGTGACCTGCGAACAGGGCGACGGCCTGGAGATGCCCAAGGACGAGCTGCCCAGCCACCGCC
GCATCGCGCACCTGCGCGCGGTGGTCCAGCAGCAGCAGGCGCGCATCGCCGAGCTGGAGAAGACCTCGGCCGACCACGCG
CACCAGCTGGCGGAGCAGAAGCGAGCCATCCGGCAGCTGAAGGCACACCTGGCTGCCAGGCGCAGCGCCAGCCCCGACCC
GCAACACCTGGAGGAGACCCGTGGGGACAGTGAGGTCCTACAGTGGGTGAACTCCCTGCAGCCGGCCAGAGTGACCCGCT
GGGGCGGGATGATCTCCACCCCGGACACTGCCCTCCAGGCGGCCATCGAGCGCTCCCTGGTGGAGAGTGGCTGCCCCGCC
TCCATCGTCCCCGAGCTGATCGAAAACGCCCACGAGCGCAGCTGGCCCCAGGGTCTGGCCACGCTAGAGACCAGACAGAT
GAACCGGCGGTGCTATAAGAACTACGTGGCCAAGCGCATCCCTGGCAAGCAGGCTGTTGTGGTGATGGCCTGTGAGAACC
AGCACATGGGCGATGACATGGTGCAGCAGCCGGGCCTTGTCATGATCTTCTCGCACGGCGTGGAAGAGATGTAG

Alignment

ORF - retro_mluc_300 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.23 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPR
          MGYDVTRFQGDVDEDLICPICSGVLEEPVQAP.CEHAFCNACITQWFSQQ.TCPVDRSVVT.A.L.PVPR
Retrocopy MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPRCEHAFCNACITQWFSQQHTCPVDRSVVTAADLSPVPR

Parental  IMRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCVKHLRS
          I..NMLSKLQI.CDNAVFGCSAVVRLDNL.SHLSDCEHNP.RPVTCEQG.GLEMPKDELP.H....HLR.
Retrocopy ILQNMLSKLQITCDNAVFGCSAVVRLDNLRSHLSDCEHNPRRPVTCEQGDGLEMPKDELPSHRRIAHLRA

Parental  VVQQQQTRIAELEKSSAEHKHQLSEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWVNSLQPAR
          VVQQQQ.RIAELEK.SA.H.HQL.EQKR.I..LKA...A.RS..P..Q.LEET....E.L.WVNSLQPAR
Retrocopy VVQQQQARIAELEKTSADHAHQLAEQKRAIRQLKAHLAARRSASPDPQHLEETRGDSEVLQWVNSLQPAR

Parental  VTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQMNRRYYENYVAKRI
          VTRWGGMISTPD..LQA.I.RSLVESGCPASIV.ELIENAHERSWPQGLATLETRQMNRR.Y.NYVAKRI
Retrocopy VTRWGGMISTPDTALQAAIERSLVESGCPASIVPELIENAHERSWPQGLATLETRQMNRRCYKNYVAKRI

Parental  PGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVEEI
          PGKQAVVVMACENQHMGDDMVQ.PGLVMIF.HGVEE.
Retrocopy PGKQAVVVMACENQHMGDDMVQQPGLVMIFSHGVEEM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_300 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001320	1 retrocopy	retro_meug_901,
Meleagris gallopavo	ENSMGAG00000006916	1 retrocopy	retro_mgal_15,
Myotis lucifugus	ENSMLUG00000006057	1 retrocopy	retro_mluc_300 ,
Mus musculus	ENSMUSG00000025373	2 retrocopies	retro_mmus_3645, retro_mmus_3648,
Otolemur garnettii	ENSOGAG00000001525	4 retrocopies	retro_ogar_2365, retro_ogar_2487, retro_ogar_3113, retro_ogar_3228,
Ochotona princeps	ENSOPRG00000001348	1 retrocopy	retro_opri_528,
Rattus norvegicus	ENSRNOG00000023456	1 retrocopy	retro_rnor_2918,
Sarcophilus harrisii	ENSSHAG00000002679	1 retrocopy	retro_shar_38,