RetrogeneDB ID: retro_mluc_321

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430674:108580..111298(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000003162
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ZNF197
• Ensembl ID: ENSMLUG00000016526
• Aliases: None
• Description: None

Sequence

>retro_mluc_321
GTGTCACATTTCAAGACGAGAGGCACTGAGGATGAGGAATCAACTGAAAAGTGTGAAAATGTCGGAAATGCAGAATCTCT
GTGGCTAAAAGTGGAAGGTCTTCACAAGGATCATATGCAGGAATCTAAGGTTGGTGAAACTTGTGATTGGGATAGCAAGG
TAGAGAACCAATTGGAAAAGCCTGAGGGAAAAAGAATGATGGAAGACAAAAGTGGCATCAGGGAAAAGATTGGAAAAGCC
AAGAACACAGCAAATATAAAGACAGAACAGAAAGACAAGGCATCTGAGAAAAGCTTACATCTGAGCTCAAAGCACGTTAC
ATACCAGACCATCCCTATAGAACAGAGAAGCAGTGAACAAGGCAAATGTGTGGAGAACATCAATGGAAATTCACATCCCC
ATCTGAAGCAGGAAACCAGTGCTTTTAAGAAATCTCATAAATGTGATGAGTGTGGGAAATTCTTCAAATATAATTCCCGC
CTTATTCAACATAAAATTATGCACACTGGGGAAAAACGCTATGAGTGCGAAGACTGTGGAGGGACTTTCCGGAGCAGTTC
GAGCCTTCGAGTCCACAAGCGGATCCATACTGGGGAGAAGCCGTATAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCT
ATTCCAGCCTTATAAACCATAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAGTGTGGAAAATCTTTCAAC
TATAGCTCTGTTTTAGACCAGCATAAGAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGAAAAGCCTT
CAGGAACAGCTCTGGTCTCAGAGTCCACAAAAGGATCCACACAGGGGAGAAGCCTTATGAATGCGATATCTGTGGGAAAA
CTTTTAGTAATAGCTCTGGCCTTAGGGTTCACAAAAGGATCCACACAGGTGAAAAGCCCTATGAATGTGATGAGTGTGGG
AAGGCCTTCATTACTTGCAGAACACTCCTAAACCATAAAAGCATCCACTTTGGAGATAAACCTTACAAATGTGATGAGTG
TGAGAAATCATTTAATTATAGCTCTCTCCTCATTCAGCATAAAGTCATCCACACTGGAGAAAAACCTTATGAATGTGATG
AATGTGGGAAGGCCTTCAGGAATAGCTCAGGCCTTATTGTACATAAAAGAATCCACACGGGAGAGAAACCTTACAAGTGT
GATGTCTGTGGCAAAGCGTTCAGCTATAGCTCAGGCCTTGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCTCATGA
ATGTAAGGAGTGTGGAAAATCTTTCAGCTATAACTCACTTCTTCTTCAACATAAGACTATTCACACTGGAGAGAGACCTT
ATGTATGTGATGTGTGTGGCAAAACCTTCAGAAACAATTCAGGTCTCAAAGTCCACAGGAGGCTCCACACTGGGGAAAAA
CCATACAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGTTCTAGCCTTAAAAACCACAAAGGAATCCATCTTGGGGA
GAAGCCCTATAAATGTAGCTATTGTGAGAAATCTTTCAATTATAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACGA
GGGAGAAACCTTTTGGGTGTGATGAGTGTGGAAAAGCCTTCAGAAATAATTCAGGTCTTAAAGTACATAAACGAATCCAT
ACTGGGGAGAGACCTTACAAATGTGAAGAATGTGGGAAAGCCTACATCTCGCTCTCAAGCCTTATAAATCATAAAAGTGT
ACACCCTGGGGAAAAGCCCTATAAGTGTGAGGAGTGTGAAAAGGCCTTTATCACATACCGAACCCTTATAAACCACAAAA
AAATTCATCTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACCTCACTCCTTTCTCAACAC
AAAAGAGTTCACACTAGAGAAAAGCCCTATGAATGCGACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAGGT
GCATAAAAGAATTCATACTGGGGAGAAACCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTA
TTAACCATAAAAGTACCCACCCTGGCAAGACACCCTATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACT
CTTATAAGCCATAAAAGAGTTCATCTTGGGGAGAAACCCTTCAAATGTGTCGAGTGTGGGAAATCTTTCAGTTACAGCTC
ACTTCTTTCTCAACACAAGAGGATCCACACAGGGGAGAAGCCCTATGTATGTGATGGTTGTGGAAAGGCATTCCGGAACA
GCTCAGGCCTCACAGTGCATAAAAGGATCCACACGGGCGAGAAACCCTATGGATGTGATGAGTGTGGGAAGGCCTACATC
TCACACTCGAGTCTTATCAACCATAAAAGCATCCATCGTGGGCAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTTAA
TTATAGATCTGTTCTTGACCAACACAAAAGGATCCACACTGGGAAGAAGCCATTCAAGTGTAGTGAGTGTGGGAAGGCTT
TTAATATCAGATCAGATCTCACCAAGCATAAAAGAATCCATGCAGGGGAGGAATCTTTAAATGTGCCAAATGTGGGAAGT
TACAGTGGCACATCACAAAAGAGAACTCATGAGGGTGGGAATGTTCTGGATGGGACCAGGATGAGCTTGTCTCTGTAG

Alignment

ORF - retro_mluc_321 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.73 %
• Parental protein coverage: 82.07 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CNECGKTFRGNTDLIQHQIMHTGQKSFRYQCSECGKAFHVHSDLIRHQVTHGGEKPYVCNDCGKAFSQNS
          C.ECGK.F..N..LIQH.IMHTG.K..RY.C..CG..F...S.L..H...H.GEKPY.C..CGKA....S
Retrocopy CDECGKFFKYNSRLIQHKIMHTGEK--RYECEDCGGTFRSSSSLRVHKRIHTGEKPYKCEECGKAYMSYS

Parental  SLKKHQKSHMSKKPYECSECGKAFRRSSNLIQHQRIHSGEKPYVCNDCGKAFRRSSNLIKHHRIHTGEKP
          SL..H...H...K...C.ECGK.F..SS.L.QH.RIH.GEKPY.C..CGKAFR.SS.L..H.RIHTGEKP
Retrocopy SLINHKSTHSGEKNCKCDECGKSFNYSSVLDQHKRIHTGEKPYECGECGKAFRNSSGLRVHKRIHTGEKP

Parental  FECKECGKAFSQSSHLRKHQRVHTGERPYECNECGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAFSQSS
          .EC..CGK.FS.SS.LR.H.R.HTGE.PYEC.ECGK.F.....L..H...H.G.KPYKC..C.K.F..SS
Retrocopy YECDICGKTFSNSSGLRVHKRIHTGEKPYECDECGKAFITCRTLLNHKSIHFGDKPYKCDECEKSFNYSS

Parental  SLIQHRRIHTGEKPHVCNVCGKAFSYSSVLRKHQIIHTGEKPYECGVCGKAFSHSSALIQHQGVHTGDKP
          .LIQH..IHTGEKP..C..CGKAF..SS.L..H..IHTGEKPY.C.VCGKAFS.SS.L..H...H.G.K.
Retrocopy LLIQHKVIHTGEKPYECDECGKAFRNSSGLIVHKRIHTGEKPYKCDVCGKAFSYSSGLAVHKSIHPGKKA

Parental  YECQECGKTFGRSSNLILHQRVHTGEKPYECTECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSS
          .EC.ECGK.F...S.L..H...HTGE.PY.C..CGKTF...S.L..H.R.H.G.KP..C..CGKA....S
Retrocopy HECKECGKSFSYNSLLLQHKTIHTGERPYVCDVCGKTFRNNSGLKVHRRLHTGEKPYKCDVCGKAYISRS

Parental  NLIHHQKVHTGEKPYTCIECGKGFSQSSHLIQHQIIHTGERPYKCTECGKSFSQRSVLIQHQRIHTGVKP
          .L..H...H.GEKPY.C..C.K.F..SS.L.QH..IHT.E.P..C.ECGK.F...S.L..H.RIHTG..P
Retrocopy SLKNHKGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTREKPFGCDECGKAFRNNSGLKVHKRIHTGERP

Parental  YDCTAWCGKCFGRSSHLLQHQRTHTGEKPYVCGVCGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVS
          Y.C...CGK.....S.L..H...H.GEKPY.C..C.KAF.....L..H..IH.GEKPY.C..C.K.F...
Retrocopy YKCEE-CGKAYISLSSLINHKSVHPGEKPYKCEECEKAFITYRTLINHKKIHLGEKPYKCDVCEKSFNYT

Parental  SDLAQHHKIHTGEKPHECLECRKAFTQLSHLIQHQRIHTGERPYVCPLCGKAFNHSTVLRSHQRVHTGEK
          S.L.QH...HT.EKP.EC..C.K.F...S.L..H.RIHTGE.PY.C..CGKA......L..H...H.G..
Retrocopy SLLSQHKRVHTREKPYECDRCEKVFRNNSSLKVHKRIHTGEKPYECDVCGKAYISHSSLINHKSTHPGKT

Parental  PHECAECGRAFSVKRTLLQHQRVHTGEKPYSCSECGRTFSDRSVLIQHHNVHTGEKPYECGDACGKAFVQ
          P..C.ECG.AF...RTL..H.RVH.GEKP..C.ECG..FS..S.L.QH...HTGEKPY.C.D.CGKAF..
Retrocopy PYTCDECGKAFFSSRTLISHKRVHLGEKPFKCVECGKSFSYSSLLSQHKRIHTGEKPYVC-DGCGKAFRN

Parental  HSHLIQHQRVHTGEKPYVCSECGHAFSARRSLVQHERIHTGERPFCCTQCDKAFSLKATLIVHLRTHTGE
          .S.L..H.R.HTGEKPY.C.ECG.A.....SL..H..IH.G..P..C..C.K.F.....L..H.R.HTG.
Retrocopy SSGLTVHKRIHTGEKPYGCDECGKAYISHSSLINHKSIHRGQQPYNC-ECGKSFNYRSVLDQHKRIHTGK

Parental  RPYECSRCGKAFSQYSVLIQHQRIHTGERPYECAECG
          .P..CS.CGKAF...S.L..H.RIH.GE........G
Retrocopy KPFKCSECGKAFNIRSDLTKHKRIHAGEESLNVPNVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_321 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008367	1 retrocopy	retro_meug_13,
Myotis lucifugus	ENSMLUG00000016526	1 retrocopy	retro_mluc_321 ,
Monodelphis domestica	ENSMODG00000010793	1 retrocopy	retro_mdom_468,