RetrogeneDB ID: retro_mluc_351

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02064989:5130..5640(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030547
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009959
• Aliases: None
• Description: None

Sequence

>retro_mluc_351
ATGAACAGCAAAGGTCAATATCCAACGCAGCCAACCTACCCTGTGCAGCCTCCTGGGAACCCAGTGTACCCGCAGACCTT
GCATCTCCCTCAGGCTCCACCCTATACCGATGCTCCGCCCGCCTACTCAGAGCTCTATCGTCCGAGCTTTGTGCACCCAG
GGGCTGCCACCGTCCCTACCATGTCAACTGCATTTCCTGGCGCCTCACTGTATCTTCCCATGGCCACCCAGTCTGTGGCT
GTTGGGCCTTTAGGCTCCACAATCCCCATGGCTTACTATCCAGTTGGCCCCATCTATCCACCTGGTTCAACAGTGCTGGT
GGAAGGCGGGTATGATGCAGGTGCCAGATTCGGAGCTGGGGCTACTGCTGGCAACATTCCTCCTCCACCCCCTGGATGCC
CTCCCAATGCTGCTCAGCTTGCAGTCATGCAGGGAGCCAACGTCCTCGTAACTCAGCGGAAGGGGAACTTCTTCATGGGC
GGTTCAGATGGTGGCTACACCATCTGGTGA

Alignment

ORF - retro_mluc_351 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.63 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPTMSAAFPGTSL
          MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPTMS.AFPG.SL
Retrocopy MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPTMSTAFPGASL

Parental  YLPMAAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQL
          YLPMA.QSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQL
Retrocopy YLPMATQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQL

Parental  AVMQGANVLVTQRKGNFFMGGTDGGYTIW
          AVMQGANVLVTQRKGNFFMGG.DGGYTIW
Retrocopy AVMQGANVLVTQRKGNFFMGGSDGGYTIW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_351 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000298	1 retrocopy	retro_chof_85,
Callithrix jacchus	ENSCJAG00000017661	2 retrocopies	retro_cjac_636, retro_cjac_793,
Dasypus novemcinctus	ENSDNOG00000009306	1 retrocopy	retro_dnov_1772,
Equus caballus	ENSECAG00000007313	1 retrocopy	retro_ecab_286,
Homo sapiens	ENSG00000183283	1 retrocopy	retro_hsap_2370,
Gorilla gorilla	ENSGGOG00000026861	1 retrocopy	retro_ggor_1800,
Myotis lucifugus	ENSMLUG00000009959	1 retrocopy	retro_mluc_351 ,
Macaca mulatta	ENSMMUG00000001884	1 retrocopy	retro_mmul_958,
Mus musculus	ENSMUSG00000000346	1 retrocopy	retro_mmus_1073,
Nomascus leucogenys	ENSNLEG00000017776	1 retrocopy	retro_nleu_360,
Otolemur garnettii	ENSOGAG00000007977	3 retrocopies	retro_ogar_2109, retro_ogar_2139, retro_ogar_3130,
Pongo abelii	ENSPPYG00000004524	1 retrocopy	retro_pabe_2140,
Sorex araneus	ENSSARG00000003823	1 retrocopy	retro_sara_632,
Tupaia belangeri	ENSTBEG00000013232	1 retrocopy	retro_tbel_3228,
Vicugna pacos	ENSVPAG00000001156	2 retrocopies	retro_vpac_314, retro_vpac_568,