RetrogeneDB ID: retro_mluc_389

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429817:1114780..1116124(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000006618
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009782
• Aliases: None
• Description: None

Sequence

>retro_mluc_389
ATGACCGTCCCCTCCCTCGAGGAGCTGGACTCCTTCAAATACAGTGACTTGCAGAACTTGGCCAAGAGTCTGGGCCTCCG
AGCTAACCTGAGGGCAGACAAGCTGCTAAAAGCCTTGAAAGCCCACCTGAAATGGGAAGCAAGAAAAGAAAATGGAAATC
AGGATGAAAGCCAAACTTCTGCATCCTCTTGTAATGAGACTGAGCTGCAGATCAGCAGTCAGAAACATGCTGAGTGGGAA
CCAGCTGGCCATGTCACCAAGAAAAGGAGAAGGCACAGGACTGTCCAGAGCAATCCTGACTCCCAGCAGGATCGTTCAGA
GATAAAAACAAGTGATCCCACTGAGTTCCAGAATCAAGAAAAGCAGGAAAACCAGGCTCTCAGACCTGTTGCAGAAGTTC
CATCTCCACCAGATGAGAGACAAGGAAACGAGAATGCAGTGTCCTTGGGAAATAGTGGAATAAATGGTAATGAAGATTCA
AAGCTACCTTCAGAAAGAAAGAAGTCTGTCTACACAGATGGGTTTTCTAAATCTGGAAAAAATAAAAGAATTGCAAACAG
TACTCCAAACTTTAAGAAGCTTCATGAGGCCCATTTTAAGGAAATGGAGTCCATTGATCAATATATTAAGAGAAAAAAGA
AAAATTTTGAACAACACAATTCACTTAATGAACTGAAGAAGCGGTCCATAACTAAGGAAGTGGTGGCAACTCCAGTGGGT
CTCCAAAGAAGATTTTCTATGGCTTGTACTCCCTCAAGCCAGCAGCGCTCACAAGGCCGGGCCCAGGGTGCTGCAGATCT
GAGCACCTTGTATATGAAGGGGTCGGTCAAGCATTCCACTCTCTCAGCAACTAAAATGAATGTCAGGTTTTCAGCTGCTA
CTAAAGTTAATGAATACAAGCGTTCACTGACCAAGACTCCAGCCAGAAAGTCTCCACATGTGTCCATATCTGGGAACACC
CCAAAAGGCCAGGCTGTGCTTGGGACAAACAAGTTAAAGGCCACAAAGAGGGATTCTGCTACAGTTATTACCCCATTCAA
GTTTTCAGCTGAAGCAGCACAGACTCCAGTCTCCAACAAGAAACCAGTTTTTGATCTCAAAGCAAGTTTGTCTCGTCCCC
TCAACTATGAGCCACACAAAGGAAAACTGAAACCATGGGGACAATCTAAAGAAAATAAGTGTCTGAATGAGCATGTAAGC
AGGGTTAGCTTCCACAAGAAAACATACAAACAACCTCGTCTTCAGACCAGGGAGGAGCAATGGAAGAAACATGAGCAACA
ACGAAAGGAGAAGAAAGCAGAGGTGTTGGGAACTCGAAGGGGCCTTATTATGGCTGCAGATTAA

Alignment

ORF - retro_mluc_389 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.96 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTVPSLEELDSFKYNDLQNLAKSLGLRANLRADKLLKALKAHLKREARKENGNQDESQTSASSCDETELQ
          MTVPSLEELDSFKY.DLQNLAKSLGLRANLRADKLLKALKAHLK.EARKENGNQDESQTSASSC.ETELQ
Retrocopy MTVPSLEELDSFKYSDLQNLAKSLGLRANLRADKLLKALKAHLKWEARKENGNQDESQTSASSCNETELQ

Parental  ISSQKQAEWEPAGHVTKKRRRRRTVHSNPDSQQDHSEIKSSDPIEFQNQEKQENQALTPVAEVPSPPDER
          ISSQK.AEWEPAGHVTKKRRR.RTV.SNPDSQQD.SEIK.SDP.EFQNQEKQENQAL.PVAEVPSPPDER
Retrocopy ISSQKHAEWEPAGHVTKKRRRHRTVQSNPDSQQDRSEIKTSDPTEFQNQEKQENQALRPVAEVPSPPDER

Parental  QGNENAMSSG----NSNEDSKVPSERKKSVYTDGFSKSGKNKRIATTTPNFKKLHEAHFKEMESIDQYIK
          QGNENA.S.G....N.NEDSK.PSERKKSVYTDGFSKSGKNKRIA..TPNFKKLHEAHFKEMESIDQYIK
Retrocopy QGNENAVSLGNSGINGNEDSKLPSERKKSVYTDGFSKSGKNKRIANSTPNFKKLHEAHFKEMESIDQYIK

Parental  RKKKNFEQHNSLNELKKRSITKEVVATPVGLQRRFSMACTPSSQQRSPGPAQGAADLSTLYMKGSVKRST
          RKKKNFEQHNSLNELKKRSITKEVVATPVGLQRRFSMACTPSSQQRS.G.AQGAADLSTLYMKGSVK.ST
Retrocopy RKKKNFEQHNSLNELKKRSITKEVVATPVGLQRRFSMACTPSSQQRSQGRAQGAADLSTLYMKGSVKHST

Parental  LSATKMNVRFSAATKDNEYKRSLTKTPARKSPHVSISGNTPKGQAVLGTNKLKATKRDSATVITPFKFSA
          LSATKMNVRFSAATK.NEYKRSLTKTPARKSPHVSISGNTPKGQAVLGTNKLKATKRDSATVITPFKFSA
Retrocopy LSATKMNVRFSAATKVNEYKRSLTKTPARKSPHVSISGNTPKGQAVLGTNKLKATKRDSATVITPFKFSA

Parental  EAAQTPVSNKKPVFDLKASLSRPLNYEPHKGKLKPWGQSKENKSLNEHVSRVSFHKYTYKQPRLQTREEQ
          EAAQTPVSNKKPVFDLKASLSRPLNYEPHKGKLKPWGQSKENK.LNEHVSRVSFHK.TYKQPRLQTREEQ
Retrocopy EAAQTPVSNKKPVFDLKASLSRPLNYEPHKGKLKPWGQSKENKCLNEHVSRVSFHKKTYKQPRLQTREEQ

Parental  RKKHEQQRKEKKAEVLGTRRGLIMAAD
          .KKHEQQRKEKKAEVLGTRRGLIMAAD
Retrocopy WKKHEQQRKEKKAEVLGTRRGLIMAAD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_389 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010774	1 retrocopy	retro_btau_1714,
Canis familiaris	ENSCAFG00000009538	3 retrocopies	retro_cfam_1685, retro_cfam_2137, retro_cfam_578,
Cavia porcellus	ENSCPOG00000012875	1 retrocopy	retro_cpor_993,
Cavia porcellus	ENSCPOG00000020956	1 retrocopy	retro_cpor_258,
Myotis lucifugus	ENSMLUG00000009782	1 retrocopy	retro_mluc_389 ,
Mustela putorius furo	ENSMPUG00000008844	1 retrocopy	retro_mputfur_1626,
Otolemur garnettii	ENSOGAG00000034763	1 retrocopy	retro_ogar_3125,
Tupaia belangeri	ENSTBEG00000014283	1 retrocopy	retro_tbel_4088,