RetrogeneDB ID: retro_mluc_398

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429768:8284952..8287172(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000012525
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000007458
• Aliases: None
• Description: None

Sequence

>retro_mluc_398
ATGCCGTACCTCGGCTCCGAGGACGCGGTGAAGGAGCTGAAGAAGGCTCTGTGTAACCCTCACGTCCAGGCGGACCGGCT
GCGCTACCGGAACGTCATCCAGCGCGTGATTAGGCACATGACTCAGGGCGTGGACATGTCTGGTGTTTTCATGGAAATGG
TGAAGGCCAGTGCCACCGTAGATATTGTTCAGAAGAAGTTGGTTTATCTCTACATGTGCACATACGCTCCCCTGAAGCCA
GATCTGGCTCTCCTGGCCATCAACACACTGTGCAAAGACTGTTCGGACCCCAACCCGATGGTGCGAGGGCTGGCACTGCG
GAGCATGTGCAGCCTCAGGATGCCTGGTGTACAGGAGTATATCCAACAGCCTATTCTCAACGGTCTGCGGGATAAGGCTT
CCTACGTCAGGAGGGTGGCAGTCCTTGGCTGTGCCAAGATGCATAATCTTCATGGAGACTCTGAAGTGGATGGTGCCCTG
GTAAATGAATTATACAGTTTGCTGCGTGACCAGGATCCAATTGTGGTGGTGAACTGCTTGAGGTCTCTAGAGGAAATTCT
GAAACAGGAAGGAGGTGTTGTCATCAATAAGCCCATCGCCCACCATCTCTTAAATCGAATGTCCAAACTGGACCAATGGG
GCCAGGCTGAAGTATTGAACTTCCTGCTCCGCTACCAGCCCCGCAGTGAGGAGGAGCTGTTTGACATTCTCAATCTGTTG
GACAGCTTTCTCAAGAGCAGTAGCCCAAGCGTGGTGATGGGAGCCGCCAAACTCTTTCTGATCTTAGCAAAAAAGTTCCC
CCACGTGCAAACGGATGTGCTCATGCAAGTGAAGGGACCTTTACTGGCTGCCTGCTCTTCGGAGAGCCGCGAGCTCTGTT
TTGCTGCCCTCTGTCACGTGCGCCAGATCTTGCATAGTTTGCCGGGTCACTTTAGCAGCCACTACAAAAAGTTCTTTTGC
TCCTACTCGGAGCCCCACTATATCAAGCTGCAGAAGGTGGAGGTGCTGTGTGAGCTGGTGAACGACGAGAACGTGCAGCA
GGTGCTCGAGGAGCTGCGCGGGTACTGCACTGACGTGTCTGCTGACTTTGCACAGGCTGCCATCTTGGCCATAGGTGGTA
TTGCCAGGACCTACACAGATCAGTGTGTGCAGATTCTAACAGAGTTGCTGGAGCTTCGACAAGAGCACATTACCACAGTG
GTGGTGCAGACTTTCCGAGACCTGGTGTGGCTGTGTCCTCAGTGTACGGAAGCTGTGTGCCAGGCCCTGCCCGGCTGTGA
GGAGAACATTCAGGACAGCGAGGGGAAGCAGGCGCTCATTTGGCTACTCGGTGTCCATGGGGAAAGAATTCCCAATGCTC
CTTACGTGTTGGAAGACTTCGTAGAGAACGTGAAGTCAGAGACATTTCCAGCTGTTAAGATGGAGCTCCTCACGGCGCTG
CTGCGCCTTTTCCTCTCCCGGCCCGCTGAGTGCCAGGACATGCTGGGCCGCTTGCTGCACTACTGCATAGAGGAAGAAAA
GGATATGGCAGTTCGGGACCGTGGTCTCTTCTATTATCGCCTCCTCTTAGCTGGCATTGATGAAGTTAAGCGGATCCTAT
GTAGCCCTAAATCTGACCCTTCTCTTGGACTTTTGGAGGATCAGGCAGAAAGACCTGTGAATAGCTGGGCCTTGGACTTC
AACACGCTGGTGCCAGTATATGGCAAAGCCCGCTGGGCAACCATCTCTAAATGCCAGGGGGCAGAGCGTCGTGGCCTAGA
GCTTCCCAACACTGCATCCTTGGCCGCATCAGGACCCCTGATTCCTGAAGAGGACAAGGAGAGGGTGCAAGAACTCTCTG
ATTCTGGAGCCCTCATGCTAGTCCCCAATCTCCAGCTTACTGCTGAGTATTTTGAGAAAACTTGGCTTAGCCTCCAAGTT
GCTCATCAGCAGGTGGTCCCTTGGCAGGGAGCAGTCCACCCAGACACCCTCCAGATGGCCCTGCAAGTGGTGAACATCCA
GACCATCGCAGTGAGCAGGGCTGGGGCTCAGCCATGGAAAGCCTACCTCAGTGCTCAGGACGATACCGGTTGTCTGTTCT
TAACAGAGCTGCTGTTGGAGCCTGAGAACTTAGAGATGCAGATCTCCGTGAAACAGAGTGGGGCGAGGACGGAGACACTG
AGCAGTTTCATTTCTGTGTTAGAAACTGTGATTGGAACAATTGGAGACATAAAACCGTAA

Alignment

ORF - retro_mluc_398 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.86 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPYLGSEDAVKELKKALCNPHVQADRLRYRNVIQRVIRHMTQGVDMSGVFMEMVKASATVDIVQKKLVYL
          MPYLGSEDAVKELKKALCNPHVQADRLRYRNVIQRVIRHMTQGVDMSGVFMEMVKASATVDIVQKKLVYL
Retrocopy MPYLGSEDAVKELKKALCNPHVQADRLRYRNVIQRVIRHMTQGVDMSGVFMEMVKASATVDIVQKKLVYL

Parental  YMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVA
          YMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVA
Retrocopy YMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVA

Parental  VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL
          VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL
Retrocopy VLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKL

Parental  DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPSVVMGAAKLFLILAKKFPHVQTDVLMQVKGP
          DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPSVVMGAAKLFLILAKKFPHVQTDVLMQVKGP
Retrocopy DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPSVVMGAAKLFLILAKKFPHVQTDVLMQVKGP

Parental  LLAACSSESRELCFAALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE
          LLAACSSESRELCFAALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE
Retrocopy LLAACSSESRELCFAALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLE

Parental  ELRGYCTDVSADFAQAAILAIGGIARTYTDQCVQILTELLELRQEHITTVVVQTFRDLVWLCPQCTEAVC
          ELRGYCTDVSADFAQAAILAIGGIARTYTDQCVQILTELLELRQEHITTVVVQTFRDLVWLCPQCTEAVC
Retrocopy ELRGYCTDVSADFAQAAILAIGGIARTYTDQCVQILTELLELRQEHITTVVVQTFRDLVWLCPQCTEAVC

Parental  QALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAE
          QALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAE
Retrocopy QALPGCEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAE

Parental  CQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILCSPKSDPSLGLLEDQAERPVNSWALDF
          CQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILCSPKSDPSLGLLEDQAERPVNSWALDF
Retrocopy CQDMLGRLLHYCIEEEKDMAVRDRGLFYYRLLLAGIDEVKRILCSPKSDPSLGLLEDQAERPVNSWALDF

Parental  NTLVPVYGKARWATISKCQGAERRGLELPNTASLAASGPLIPEEDKERVQELSDSGALMLVPNLQLTAEY
          NTLVPVYGKARWATISKCQGAERRGLELPNTASLAASGPLIPEEDKERVQELSDSGALMLVPNLQLTAEY
Retrocopy NTLVPVYGKARWATISKCQGAERRGLELPNTASLAASGPLIPEEDKERVQELSDSGALMLVPNLQLTAEY

Parental  FEKTWLSLQVAHQQVVPWQGAVHPDTLQMALQVVNIQTIAVSRAGAQPWKAYLSAQDDTGCLFLTELLLE
          FEKTWLSLQVAHQQVVPWQGAVHPDTLQMALQVVNIQTIAVSRAGAQPWKAYLSAQDDTGCLFLTELLLE
Retrocopy FEKTWLSLQVAHQQVVPWQGAVHPDTLQMALQVVNIQTIAVSRAGAQPWKAYLSAQDDTGCLFLTELLLE

Parental  PENLEMQISVKQSEARTETLSSFISVLETVIGTIGDIKP
          PENLEMQISVKQS.ARTETLSSFISVLETVIGTIGDIKP
Retrocopy PENLEMQISVKQSGARTETLSSFISVLETVIGTIGDIKP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_398 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002837	1 retrocopy	retro_mluc_2443,
Myotis lucifugus	ENSMLUG00000007458	1 retrocopy	retro_mluc_398 ,