RetrogeneDB ID: retro_mluc_430

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02063715:9717..11127(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPS6KB2
• Ensembl ID: ENSMLUG00000005128
• Aliases: None
• Description: None

Sequence

>retro_mluc_430
ATGGCGGCCGCATTGGACCTGGACCTGGAGACCGAGGAAAGCAGCGAGGGCGAGCCAGAGTTCAGCCCTGCGGACGCGTG
TCCCCTCGCCAACTTGAGGACGGCTGCCCTGGAGTCCATGTGGCACTGTGAGGAGGTGGAGCTGACCGAGACCTGTGTGA
AGCCCGGCCCCGAGCGCCTGGGGCCCCACTGCTTTGAGCTGCTGCGTGTGCTGGGCACGGGGGGCTATGGCAAGGTGTTC
CAGGTGCGAAAGGTGCAGGGCACCAACGTGGGCAAAATATATGCCATGAAGGTCCTGAGGAAGGACGAGCTTGTGCGCAG
CGCCAAGGACGTGGCGCACACACAAGCTGAACGGCGCATTCTGGGGTCGGTGAAGCACCCCTTCATTGTGGAGCTGGCCT
ATGCCTTCCAGACCAGGGGCAAACTCTACCTGGTCCTCGAGTGCCTCAGTGGCGGCGATCTCTTCACACACTTGCAGCGA
AAGGGCATCTTGCTGGAAGACACGGCCTGTTTCTACCTGGCAGAGATCACACTGGCCCTGGGCCACCTCCACTCCCAAGG
CATCATCTACCGGGACCTCAAACCCAAGAACATCATGCTGGACAGCCAGGGCCACATCAAACTGACGGACTTCGGACTCG
GCAAGGAGTCCATTCACCAGGGTGCTGTCACCCACACCTTCTGTGGCACCATTGAGTACATGGCCCCTGAGATTGTGGTG
CGCCGCGGCCACAACCGGGCGGTGGACTGGTGGAGCCTGGGCGTCCTCATGTACGAGATGCTCACTGGCTCGCCACCCTT
CACTGCAGAGAATCGGAAGAAAACCATGGACAAGATCATCAAAGGGAAGCTGAGGCTGCCCCTTTACCTCACCCCGGATG
CCCGGGACCTCGTCAAAAAGTTTCTGAAGCGGAATCCCCGCCGACGGATCGGGGGTGGCCCAGGGGACGCTGCAGACGTA
CAGAGGCACCCCTTTTTCCGGCACATTCATTGGGATGATCTCCTGGCCCGCCGCGTGGACCCCCCTTTCAGGCCCTGTCT
GCAATCAGAAGAGGATGTGAGCCAGTTTGACACCCACTTCACGCGCCAGGCACCAGTGGACAGTCCGGATGACACGGCCC
TCAGTGAGAGCGCCAACCAGGCCTTCCTGGACTTCTCGTACGAGGCGCCCTCTGTCCTGGACAGCCTCAAGGAGGGCTTC
TCCTTCTAGCCCAAGCTGCGCTCCCCCAGGCGCCTCACCAGCAGCCCCCTGAAGTTCTCACCCTTTGAGGGGTTCCGACC
CAGTCCCGGCCCACCAGAGCCCATGGAGCCCCCTCTATGTCCTCTCCCGCCAGCACCGCCACCACCACCCTCGAGCACTG
TCCCCCTCCCCATCCGACCCCCCCCTCAGGGAAAAGGAAGTCCAAGAGGG

Alignment

ORF - retro_mluc_430 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.5 %
• Parental protein coverage: 98.77 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAVFDLDLETEEGSEGEGEGEPEFSPADACPLADLRTAALEPAGHYEEVELTETSVNPGPERIGPHCFE
          MAA..DLDLETEE.S....EGEPEFSPADACPLA.LRTAALE...H.EEVELTET.V.PGPER.GPHCFE
Retrocopy MAAALDLDLETEESS----EGEPEFSPADACPLANLRTAALESMWHCEEVELTETCVKPGPERLGPHCFE

Parental  LLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRKAKIVRNAKDTAHTRAERNILESVKHPFIVELAYAF
          LLRVLG.GGYGKVFQVRKVQGTN.GKIYAMKVLRK...VR.AKD.AHT.AER.IL.SVKHPFIVELAYAF
Retrocopy LLRVLGTGGYGKVFQVRKVQGTNVGKIYAMKVLRKDELVRSAKDVAHTQAERRILGSVKHPFIVELAYAF

Parental  QTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITLALGHHLHSHGIIYRDLKPENIMLSSQGH
          QT.GKLYL.LECLSGG.LFTHL.R.GI.LEDTACFYLAEITLALGH.LHS.GIIYRDLKP.NIML.SQGH
Retrocopy QTRGKLYLVLECLSGGDLFTHLQRKGILLEDTACFYLAEITLALGH-LHSQGIIYRDLKPKNIMLDSQGH

Parental  IKLTDFGLCKESIHEGVVTHTFCGTIEYMAPEILVRSGHNRAVDWWSLGALMYDMLTGSPPFTAENRKKT
          IKLTDFGL.KESIH.G.VTHTFCGTIEYMAPEI.VR.GHNRAVDWWSLG.LMY.MLTGSPPFTAENRKKT
Retrocopy IKLTDFGLGKESIHQGAVTHTFCGTIEYMAPEIVVRRGHNRAVDWWSLGVLMYEMLTGSPPFTAENRKKT

Parental  MDKIIKGKLTLPPYLTPDARDLVKKFLKRNPSQRIGGGPGDAADVQRHPFFRHINWDDLLARRVDPPFRP
          MDKIIKGKL.LP.YLTPDARDLVKKFLKRNP..RIGGGPGDAADVQRHPFFRHI.WDDLLARRVDPPFRP
Retrocopy MDKIIKGKLRLPLYLTPDARDLVKKFLKRNPRRRIGGGPGDAADVQRHPFFRHIHWDDLLARRVDPPFRP

Parental  CLQSEEDVSQFDTHFTRQTPVDSPDDTALSESANQAFLGFTYVAPSVLDSIKEGFSFQPKRRSPRRLNSS
          CLQSEEDVSQFDTHFTRQ.PVDSPDDTALSESANQAFL.F.Y.APSVLDS.KEGFSF.PK.RSPRRL.SS
Retrocopy CLQSEEDVSQFDTHFTRQAPVDSPDDTALSESANQAFLDFSYEAPSVLDSLKEGFSF*PKLRSPRRLTSS

Parental  PRTPISPLKFSPFEGFRPSPGPPEPMEPPLPPLLPAPPPPPSSTVPLPIRPPSGKKKSKRG
          P....SP..F..F......P.P.EP...PL.PL.PAPPPPPSST...........K.S.RG
Retrocopy P-LKFSP--FEGFRPSPGPPEPMEP---PLCPLPPAPPPPPSSTXXXXXXXXXQGKGSPRG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_430 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005128	2 retrocopies	retro_mluc_2631, retro_mluc_430 ,