RetrogeneDB ID: retro_mluc_448

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02065728:1..957(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CYB5R4
• Ensembl ID: ENSMLUG00000010379
• Aliases: None
• Description: None

Sequence

>retro_mluc_448
TTTTGGGGAGAAACTTTCCTCGGGGTTTTTTCAAATCTTTAAAAAATTTGGGCTAAGCCAGGCAATTCAGGAAAATTTTT
CCTTTGCGGGTTGTTGCAAAGGTGGGAAAGATAGAGATTGTCCTAAAGAAAAAAGAGAATACTTCTTGGCAATGTCTTGG
TCATCCCCTGGAGAATCATAATTCACTTATTCCCAAGAAAGATACAGGTTTGTACTACAGAAAGTGCCAGTTAATTTCCA
AGGAAGATGCCACTCATGATACGAAGCTTTTCTGCTTGATGCTGCCACCAAGCACTCACCTTCAGGTGCCAATTGGGCAA
CATGTTTACCTCAAGCTAACTATTGCAGGTACTGAAATAGTGAAGCCATATACACCTGTATCTGCTTCCTTACTCTCAGA
GTTTAAGGAACCAGTTATTCCCAATAATAAATACATCTACTTTCTGATCAAAATCTATCCTGCTGGACTCTTTACACCAG
AGCTTGATCATCTTCAGATTGGAGATTTTGTTTCCGTAAGCAATCCTGAAGGCAATTTTAAAATATCCCAGTTCCAAGAA
TTGGAAGATCTCTTTTTATTGGCAGCTGGAACAGGCTTCACACCAATGGTTAAAATACTGAATTATGCTTTGACCAATAT
ATCCAGTCTCAGGAAGGTGAAGCTGATGTTCTTCAATAAAACAGAGGATGATATAATTTGGAGAAGCCAATTGGAGAAAT
TAGCATTTAAAGATAAAAGATTTGATGTTGAATTTGTTCTCTCAAAACCTACTTCTGAATGGAATGGGAAAAGGGGACAC
ATTTCATTAGATCTTCTTTCTGAATTTTTGAAAAGAAGTTCAGACAAATCCAAAGTTCTCGTCTGCATTTGTGGACCAAT
GCCATTTACAGAACAAGGAATGAGGATGCTGCATGATCTTAACTTTTCCAAAGATGAGATCCATGGTTTTACTGCA

Alignment

ORF - retro_mluc_448 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.06 %
• Parental protein coverage: 61.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FRAETIIKDYSYLIHI-ELSHAIQEDFS-VRVVANVGKIEIVLKKKENTSWECLGHPLENHNSLIPKKDT
          F..ET.....S.L..I..LS.AIQE.FS..RVVA.VGKIEIVLKKKENTSW.CLGHPLENHNSLIPKKDT
Retrocopy FWGETFLGVFSNL*KI>GLSQAIQENFS>LRVVAKVGKIEIVLKKKENTSWQCLGHPLENHNSLIPKKDT

Parental  GLYYRKCQLISKEDATHDTKLFCLMLPPSTHLQVPIGQHVYLKLTIAGTEIVKPYTPVSASLLSEFKEPV
          GLYYRKCQLISKEDATHDTKLFCLMLPPSTHLQVPIGQHVYLKLTIAGTEIVKPYTPVSASLLSEFKEPV
Retrocopy GLYYRKCQLISKEDATHDTKLFCLMLPPSTHLQVPIGQHVYLKLTIAGTEIVKPYTPVSASLLSEFKEPV

Parental  IPNNKYIYFLIKIYPAGLFTPELDHLQIGDFVSVSNPEGNFKISQFQELEDLFLLAAGTGFTPMVKILNY
          IPNNKYIYFLIKIYPAGLFTPELDHLQIGDFVSVSNPEGNFKISQFQELEDLFLLAAGTGFTPMVKILNY
Retrocopy IPNNKYIYFLIKIYPAGLFTPELDHLQIGDFVSVSNPEGNFKISQFQELEDLFLLAAGTGFTPMVKILNY

Parental  ALTNISSLRKVKLMFFNKTEDDIIWRSQLEKLAFKDKRFDVEFVLSKPTSEWNGKRGHISLDLLSEFLKR
          ALTNISSLRKVKLMFFNKTEDDIIWRSQLEKLAFKDKRFDVEFVLSKPTSEWNGKRGHISLDLLSEFLKR
Retrocopy ALTNISSLRKVKLMFFNKTEDDIIWRSQLEKLAFKDKRFDVEFVLSKPTSEWNGKRGHISLDLLSEFLKR

Parental  SSDKSKVLICICGPMPFTEQGMRMLHDLNFSKDEIHGFTA
          SSDKSKVL.CICGPMPFTEQGMRMLHDLNFSKDEIHGFTA
Retrocopy SSDKSKVLVCICGPMPFTEQGMRMLHDLNFSKDEIHGFTA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_448 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010379	1 retrocopy	retro_mluc_448 ,
Mus musculus	ENSMUSG00000032872	1 retrocopy	retro_mmus_2438,