RetrogeneDB ID: retro_mluc_498

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02072310:3841..5277(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023554
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000005258
• Aliases: None
• Description: None

Sequence

>retro_mluc_498
GGGAAAGGGGTTGTGAGTCAGAACAAGGAGCACAAATCATCCTATAAAGAAAAACGTCCAGTGGATGCCAGGGGAGATGA
GAAGTCGCCTTTGAGCAGAGAGAAATCCCACAAGGCCATCGCCAAAGAGGAAAACCGGAGGCCCTCTCAGGGGATGGCAC
GAAGGAGAAAGCGCCCTCTAGTGATATCAAGAAAGAGAAGGATGGAGAGGGCAGCTCCAAGAAGTTTTCATCCATCCCCC
TTGGAGACTGCTCCAGACAACCACCATAAAAAGCAAAAGCACAAAGACTCAGAGAAAACTAAATCAGACAAAAACAAGCA
AAGTCTAGACAGCCTAGACAGAGGAAAGGGGGCCGGAGACCTGCTGCCCAAAGCAAAAGAGAAGGTTTCTGACAACCTAA
AGACTCAAGAAGAGAAAGTGAAAACTCATTCAGACAGAAAGTCAGCGGGCTCCCTCCCTAGAGTTGAGGAGATGGCTATG
GGTGAAGAATTTGAGCAGCCCACCATGTCTTTTGAGTCCTATCTCAGCTATGACCAGCCCCGGAAGAAAAAGAAAAAGAT
TGTGAAAACCTCAACTGCGACTGCTGGAGAAAAAGCACTTAAAAAAAATGATTCGAAAAGCACTGGTAAAAGCTCGGATA
CAGTTCAGAAATTGCCTAAGGTGAGTGGGAACAAGTCCAAGAAGCATCAGGCAGCTGGAGCCGATGCAGCCAAGCCGAGA
AAGGTCCCCATCGATGTCCTGCCAGTGTTGCCAGGCATCTCATTACCTGTGATACAGGCCAATGACCGGCCGCTTCCTTC
CCTCGAATTGATATCCTCCTTCCAACCAAAGCGAAAAGCACACTCTTCTTCCCAGGAGGAGGAGGAAGTTGGATTCACTG
GGCGGAGAATGCATTCTAAGATGCAGGTGTACTCTGGTTCCAAGTGTGCCTATCTCCCCAAAATGATGACCTTGCACCAG
CAGTGCATCCGGGTCCTTCAAAACAACATTGATTCAATCTTTGAAGTGGGAGGCGTCCCGTATTCTGTTCTTGAACCCGT
TTTGGAGAGGTGTACCCCTGATCAGCTGTATCGCATAGAGGAATACAATCATGTATTAATTGAAGAAACAGATCAATTAT
GGAAAGTTCATTGTCACCGAGACTTTAAGGAAGAAAGGCCAGAAGAGTATGAGTCATGGCGGGAGATCTACTTGAGGCTT
CAGGATGCCCGAGAGCAGCGGCTACAGTTATTGACAAAGAATATCCAATGTGCACATGCCAATAAACACAAAGGCCGACA
GACAAAGATGGTCTCTGTAGCCAAACCACCTCGTGATGTTCAAGGAGGCAGGAGAAGTTTGGAACAGGAGGAGCAGCTGT
GCCCGAGAAAATCGGGATTAAGCCAGCCCCCTACCCCATAGGAAGCAGCCAAGCTCCCTCCAACAGTGGCAGCAGC

Alignment

ORF - retro_mluc_498 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.69 %
• Parental protein coverage: 59.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GKGVVSQNKEHKSSHKEKRPVDARGDEKSPLSREKSHKAIAKEENRRP-LSGDGTKEKAPSSGIK-KEKD
          GKGVVSQNKEHKSS.KEKRPVDARGDEKSPLSREKSHKAIAKEENRRP.LSGDGTKEKAPSS.IK.K...
Retrocopy GKGVVSQNKEHKSSYKEKRPVDARGDEKSPLSREKSHKAIAKEENRRP<LSGDGTKEKAPSSDIK>KRRM

Parental  REGNSKKFS-SPLETASDNHRKKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVSNNLKTQEG
          .......F..SPLETA.DNH.KKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVS.NLKTQE.
Retrocopy ERAAPRSFHPSPLETAPDNHHKKQKHKDSEKTKSDKNKQSLDSLDRGKGAGDLLPKAKEKVSDNLKTQEE

Parental  KVKTHSDRKSAGSLPRVEETDMDDEFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKALKKNDSKST
          KVKTHSDRKSAGSLPRVEE..M..EFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKAL...DSKST
Retrocopy KVKTHSDRKSAGSLPRVEEMAMGEEFEQPTMSFESYLSYDQPRKKKKKIVKTSTATAGEKALXXXDSKST

Parental  SKSSDTVQKSPKVNENKSEKHQAAGADAAKPRKVPIDVLPVLPDIPLPVIQANYRPLPSLELISSFQPKR
          .KSSDTVQK.PKV..NKS.KHQAAGADAAKPRKVPIDVLPVLP.I.LPVIQAN.RPLPSLELISSFQPKR
Retrocopy GKSSDTVQKLPKVSGNKSKKHQAAGADAAKPRKVPIDVLPVLPGISLPVIQANDRPLPSLELISSFQPKR

Parental  KAHSSSQEEEEVGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVL
          KAHSSSQEEEEVGFTGRRM.SKMQVYSGSKCAYLPKMMTLHQQCIRVL.NNIDSIFEVGGVPYSVLEPVL
Retrocopy KAHSSSQEEEEVGFTGRRMHSKMQVYSGSKCAYLPKMMTLHQQCIRVLQNNIDSIFEVGGVPYSVLEPVL

Parental  ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDAREQRLQLLTKNIRSA
          ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWRE.YLRLQDAREQRLQLLTKNI..A
Retrocopy ERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWREIYLRLQDAREQRLQLLTKNIQCA

Parental  HANKPKGRQAKMAFVHSVAKPPRDVR-RRQEKFGTGGAAVPEKIRIKPAPYPIGSSQAPSNSGNS
          HANK.KGRQ.KM....SVAKPPRDV..RRQEKFGTGGAAVPEKI.IKPAPYPIGSSQAPSNSG.S
Retrocopy HANKHKGRQTKMV---SVAKPPRDVQ<RRQEKFGTGGAAVPEKIGIKPAPYPIGSSQAPSNSGSS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_498 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000011241	1 retrocopy	retro_dnov_1854,
Loxodonta africana	ENSLAFG00000017306	1 retrocopy	retro_lafr_424,
Myotis lucifugus	ENSMLUG00000005258	1 retrocopy	retro_mluc_498 ,
Monodelphis domestica	ENSMODG00000012842	1 retrocopy	retro_mdom_1961,
Sarcophilus harrisii	ENSSHAG00000006165	1 retrocopy	retro_shar_665,