RetrogeneDB ID: retro_mluc_500

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02072378:1350..2961(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000002643
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011021
• Aliases: None
• Description: None

Sequence

>retro_mluc_500
ATGGCGCGACTTTCGGAGCAGGAGCGGGCCCGACCTTGTCTTTGATGAAGAAGACCTCCACTATGAGGAGGAAATTATGC
GGAACCAGTTTTCGGTCAAATGCTGGCTCCGCTACATTGAGTTCAAGCAGGGGGCCCCCGAAGCCCAGGCTCAATCAGTT
GTACGAGCGAGCGCTGAAGCTGCTGCCCTGCAGCTACAAACTCTGGTACCGCTACCTGAAAGCACGCAGGGCACAGGTGA
AGCATCGCTGTGTGACTGATCCTGCCTATGAAGATGTCAACAACTGCCACGAGAGGGCCTTTGTTTTCATGCACAAGATG
CCACGTCTATGGCTAGATTATTGTCAGTTCTTGGTGGACCAGGGCCGTATCACTCACACACGCCGCACTTTCAAACCGTG
TCCTCCGGGCGCTGCCTATCACACAGCACTCTCGTATTTGGCCTTTGTACTTGCGCTTCCTGCGCTCACACCCACTACCT
GAGACAGCCGTGCGGGGCTACCGGCGCTTCCTCAAGCTGAGCCCTGAGAGCGCAGAGGAATACATCGAGTACCTCAAGTC
AAGTGACCGGCTGGACGAGGCTGCACAGTGCCTGGCCACCGTGGTGAATGATGAGCGCTTCGTCTCCAAGGCTGGCAAGT
CCAACTACCAGCTGTGGCATGAGCTCTGTGACCTCATCTCCCAGAACCCGGACAAGGTGCAGTCGCTCAATGTGGACGCC
ATCATCCGAGGGGGCCTTACCCGCTTCACAGACCAGCTGGGCAAGCTCTGGTGTTCACTGGCTGACTACTACATCCGCAG
TGGCCATTTTGAGAAGGCTCGGGACGTGTACGAGGAGGCCATCCGGACCGTGATGACCGTGCGGGACTTCACCCAGGTGT
TTGACAGCTATGCCCAGTTCGAGGAGAGCATGATTGCAGCGAAGATGGAGACCACCTCGGAGCTGGGGCGGGAAGAAGAG
GATGACGTGGACTTGGAACTGCGCCTGGCCCGCTTTGAGCAGCTGATCAGTCGGCGGCCCCTGCTCCTCAACAGCGTCTT
GCTGCGCCAGAACCCGCACCGTGTCCATGAGTGGCACAAGCGTGTGGCCCTGCACCAGGGCCGCCCCCGGGAGATCATCA
ACACGTACACGGAGGCTGTGCAGACAGTGGACCCCTTCAAGGCTACGGGCAAACCCCATACGCTGTGGGTTGCATTTGCC
AAGTTTTATGAGGACAACGGGCAGCTGGATGATGCCCGCATCATCCTGGAGAAGGCCACCAAGGTGAGCTTCAAGCAAGT
GGATGACCTGGCAAGTGTGTGGTGCGAGTGTAGTGAGCTGGAGCTCAGGCATGAGAATTATGACCAGGCCTTGCGGCTGC
TGAGGAAGGCAACAGCACTGCCCGCCCGCCAGGTAGAGTATTTTGACGGCTCGGAGCCTGTGCAGAACCGTGTGTACAAA
TCATTAAAGGTGTGGTCCATGCTTGCGGACTTGGAGGAAAGCCTTGGCACCTTTCAGTCTACCAAGGCTGTATACGACCG
TATTCTGGACCTGCGCATCGCTACCCCCCAGATCGTCATCAACTATGCCATGTTCCTGGAGGAGCACAAGTACTTCGAGG
AGAGCTTCAAG

Alignment

ORF - retro_mluc_500 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.59 %
• Parental protein coverage: 76.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MARLSRQER-PDLVFDEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAP-KPRLNQLYERALKLLPCSYKLW
          MARLS.QER.PDLVFDEEDL.YEEEIMRNQFSVKCWLRYIEFKQGAP.KPRLNQLYERALKLLPCSYKLW
Retrocopy MARLSEQER>PDLVFDEEDLHYEEEIMRNQFSVKCWLRYIEFKQGAP>KPRLNQLYERALKLLPCSYKLW

Parental  YRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLVDQGRITHTRRTF-DRALRAL
          YRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLVDQGRITHTRRTF..R.LRAL
Retrocopy YRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLVDQGRITHTRRTF>NRVLRAL

Parental  PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFV
          PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQ.LATVVNDERFV
Retrocopy PITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQCLATVVNDERFV

Parental  SKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTGFTDQLGKLWCSLADYYIRSGHFEKARDVYE
          SKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLT.FTDQLGKLWCSLADYYIRSGHFEKARDVYE
Retrocopy SKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYE

Parental  EAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLL
          EAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLL
Retrocopy EAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLL

Parental  RQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
          RQNPH.VHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
Retrocopy RQNPHRVHEWHKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK

Parental  ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSML
          ATKVSFKQVDDLASVWCEC.ELELRHENYDQALRLLRKATALPAR..EYFDGSEPVQNRVYKSLKVWSML
Retrocopy ATKVSFKQVDDLASVWCECSELELRHENYDQALRLLRKATALPARQVEYFDGSEPVQNRVYKSLKVWSML

Parental  ADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFK
          ADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFK
Retrocopy ADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_500 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011021	1 retrocopy	retro_mluc_500 ,