RetrogeneDB ID: retro_mluc_513

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:13383896..13385001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC82
• Ensembl ID: ENSMLUG00000008655
• Aliases: None
• Description: None

Sequence

>retro_mluc_513
CAGAGTAGTATTGATTTACCAGACCAGGAAAAGCATTCAAGTCCAGAGGATGCTGATCTCAGCAAGCACACTGAACAAAT
AATAGAGGATTCAGAAGAAAACGTAAAGCGAGGGAAGAGAAGAACCTCGGTGATGAGTGACAGTGATGAGAGTGGTGACA
GTGACGTCCCAGTGAGGAAAGTAGGTTTTAAACGTCCGCGTAGAGTAGTTGAAGATGAATGTTCTTCAGCGGAGATGAAG
CAGAATCAACCTGAGAAAACTTCCACTGCAAGAAAGCAAGAAATACTCCAGAAGCTGAAAGAACTCTCAAAACAAAGATC
TCATCAGAGACCTAATAGTAGTTGAGATTTTGAGGACTCTGAAAGGGAATCCTGCCCAATCAGTGATGAAAATGATGAAG
GTGAGGAGGAGAATGATGAATCTGATGAAGATGGAGACAATTACATTTTTGATGACTTTGTAGTACCAGATGAGGAGAGT
GATGAAGAGAATGAAAGCCAGAGAGGAAAACAGTTAGCTTTATCACACCTGAAATCTAATTCAATTATTCTTTTAGTAGC
TTCTGCTTCTACTTTGAACTAGAAGTTGTGAAGGCTTTCCTGATCAATGCTTTAGATGAATCATTCCTGGGAACATTATA
TGATGGCATCAGGCAGGAATCATATGCACAAGAAATGCTGAAAGCTTTTGATGATTTGGACAACTGCTATGTTCAGCCTT
GTCTGGAGAACTTATTCTCTAGTAGTCGTTGAAAAAAGAAGTATAAGGAGCGTTAGAAAGTTATTCTGAGGTGAGCATCT
ATCCGGAGAAAGCTAAAGACTGTACCTGCCAGGCTTGCGGGTTGTATCGCCATTGTGCAGAGTTAGTGAGCTTATCAGGG
AAGCAGTACAACCCCGAGACTATGAAAACTGATGATTTCATGCCATGGGACAAGCAGGAATTTTTTATTGGCAGAATTTG
TGCTAACCGTACCAGAATTTATCATAATGTGAAACATTTTAAATTCAAGCTGTATCAAGAATGTTGCTCCATAGTAAATA
CAGAAAAACTTGAGGATGAAGACATTAAAAAGAAACAGTGGAAAGAATTTTCAATCAGTCAAAAG

Alignment

ORF - retro_mluc_513 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.18 %
• Parental protein coverage: 72.69 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QSSIDLPDQEKHSSPEDADLSKHTEQIIEEDLEEENVKRGKRRRTLVMSDSDDSGDSDVLVRKVGVKRPR
          QSSIDLPDQEKHSSPEDADLSKHTEQIIE....EENVKRGKRR.T.VMSDSD.SGDSDV.VRKVG.KRPR
Retrocopy QSSIDLPDQEKHSSPEDADLSKHTEQIIEDS--EENVKRGKRR-TSVMSDSDESGDSDVPVRKVGFKRPR

Parental  RVVEDECSSAEMEQNQPEKTSAARKREQLQKLKELSKQRSHQRRNSSRDLEDSERESCPISDENDEDEES
          RVVEDECSSAEM.QNQPEKTS.ARK.E.LQKLKELSKQRSHQR.NSS.D.EDSERESCPISDENDE.EE.
Retrocopy RVVEDECSSAEMKQNQPEKTSTARKQEILQKLKELSKQRSHQRPNSS*DFEDSERESCPISDENDEGEEE

Parental  DEDEEEEVDESDEDGDNYIIDDFVVPDEEGDEESESQRGEQLATSQLKSNSL-FSFSGPYTHFE-RVVKA
          .....E..D....D.......D....DEE........RG.QLA.S.LKSNS...SFS.....FE..VVKA
Retrocopy NDESDEDGDNYIFD--DFVVPD-EESDEENESQ----RGKQLALSHLKSNSI<YSFSSFCFYFELEVVKA

Parental  LLINALDESFLGTLYDHTRQKSYVREMLTSLDNLDNRVVQPRLENLFSRSRWKEQYKER-VGSYSDVSIY
          .LINALDESFLGTLYD..RQ.SY..EML...D.LDN..VQP.LENLFS.SR.K..YKER...SYS.VSIY
Retrocopy FLINALDESFLGTLYDGIRQESYAQEMLKAFDDLDNCYVQPCLENLFSSSR*KKKYKER<LESYSEVSIY

Parental  PKTAKNCSCQACGLHRHCAYLVSLSGKQYNPRTMKTDDFMPWDKQEYFIGRICANRTRVYHNLKHFKFKL
          P..AK.C.CQACGL.RHCA.LVSLSGKQYNP.TMKTDDFMPWDKQE.FIGRICANRTR.YHN.KHFKFKL
Retrocopy PEKAKDCTCQACGLYRHCAELVSLSGKQYNPETMKTDDFMPWDKQEFFIGRICANRTRIYHNVKHFKFKL

Parental  YQECCSIVNTEKREDEEVNETVERIFNQSEE
          YQECCSIVNTEK.EDE.........F..S..
Retrocopy YQECCSIVNTEKLEDEDIKKKQWKEFSISQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_513 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000008655	1 retrocopy	retro_mluc_513 ,