RetrogeneDB ID: retro_mluc_531

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:5600956..5601391(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TESC
• Ensembl ID: ENSMLUG00000001775
• Aliases: None
• Description: None

Sequence

>retro_mluc_531
AAGAACCTGCTCAAGGGGCCCAGCGGCCTGGCCGACGAGATCAACTTTGAGGACTTCCTAACCATCATGGCCTACTTCCA
GCCCATCGACGTCACCATGGACGAGGAGCAGGTGCAGCTGTGCCGGAAAGAGAAGCTGCGATTTCTGTTACACATGTATG
ACTCGGACAGTGACGGCCGCATCACCCTGGAGGAATATCGAAATGTGGTGGAGGAGCTGCTCTCAGGGAACCCACACATC
GAGAAGGACTCGGCCCGCTCCATCACCGACGAGGCCATGATGGAGGCGGCCAGCGTCTGCATGGGGCAGATGGAGCCTGA
CCAGGTGTATGAGGGCATCACTTTCGACGACTTCCTGAAGATCTGGCAGGGGATCGACATCGAGACCAAGATGCACGTCC
TCTTCCTTAACATGGAGACCATGGCCCTCTGCCAC

Alignment

ORF - retro_mluc_531 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.86 %
• Parental protein coverage: 74.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RNLRKGPSGLADEINFEDFLTIMAYFQPIDVTMDEEQVQLCRKEKLRFLFHMYDSDSDGRITLEEYRNVV
          .NL.KGPSGLADEINFEDFLTIMAYFQPIDVTMDEEQVQLCRKEKLRFL.HMYDSDSDGRITLEEYRNVV
Retrocopy KNLLKGPSGLADEINFEDFLTIMAYFQPIDVTMDEEQVQLCRKEKLRFLLHMYDSDSDGRITLEEYRNVV

Parental  EELLSGNPHIEKDSARSIADGAMMEAASVCMGQMEPDQVYEGITFDDFLKIWQGIDIETKMHVRFLNMET
          EELLSGNPHIEKDSARSI.D.AMMEAASVCMGQMEPDQVYEGITFDDFLKIWQGIDIETKMHV.FLNMET
Retrocopy EELLSGNPHIEKDSARSITDEAMMEAASVCMGQMEPDQVYEGITFDDFLKIWQGIDIETKMHVLFLNMET

Parental  MALCH
          MALCH
Retrocopy MALCH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_531 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012517	1 retrocopy	retro_amel_1156,
Canis familiaris	ENSCAFG00000009300	1 retrocopy	retro_cfam_1310,
Equus caballus	ENSECAG00000011177	1 retrocopy	retro_ecab_1005,
Felis catus	ENSFCAG00000002633	1 retrocopy	retro_fcat_1841,
Myotis lucifugus	ENSMLUG00000001775	1 retrocopy	retro_mluc_531 ,
Mus musculus	ENSMUSG00000029359	1 retrocopy	retro_mmus_212,
Rattus norvegicus	ENSRNOG00000001128	1 retrocopy	retro_rnor_244,